Mercurial > repos > yhoogstrate > ega_download_streamer

comparison ega_download_streamer.xml @ 4:42fbce72bc07 draft

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/ega_client_galaxy_wrapper commit b05c45b7b2a6a7c9cace195707f0609b1a1ed20a
author yhoogstrate
date Tue, 21 Jun 2016 09:51:55 -0400
parents a1f6611f0533
children
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3:a1f6611f0533 4:42fbce72bc07
111 </tests> 111 </tests>
112 112
113 <help> 113 <help>
114 **What it does** 114 **What it does**
115 115
116 Individual files or whole datasets may be downloaded from European Genome-phenome Archive (EGA) in a secure manner by first placing a download request and then downloading the file/s associated with the request. All files are automatically encrypted prior to streaming and must be decrypted using the streamer after download is complete. 116 Individual files or whole datasets may be downloaded from European Genome-phenome Archive (EGA) in a secure manner by first placing a download request and then downloading the file/s associated with the request. All files are automatically encrypted prior to streaming and shall be decrypted using the streamer after downloading has completed.
117 117
118 To download a given dataset, the user should provide the corresponding EGA file identifier (e.g. EGAF00001059069). 118 **How to use**
119
120 When you load the tool in galaxy, the user should provide the corresponding EGA file identifier (e.g. EGAF00001059069).
119 121
120 **Configuration** 122 **Configuration**
121 123
122 The admin has to configure the server such that the environment variables $user and $pass are exported and reflect the credentials of the EGA account. The user and password shall not be visible to users. This can also be done in the config/jobs_conf.xml file. 124 The admin has to configure a generic account, further described in the README: https://raw.githubusercontent.com/ErasmusMC-Bioinformatics/ega_client_galaxy_wrapper/master/README.rst
123 125
124 https://www.ebi.ac.uk/ega/about/your_EGA_account/download_streaming_client 126 https://www.ebi.ac.uk/ega/about/your_EGA_account/download_streaming_client
125 </help> 127 </help>
126 128
127 <citations> 129 <citations>