Mercurial > repos > yhoogstrate > featurecounts

diff tool_dependencies.xml @ 3:e04fbcc4e91a draft default tip

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 597fa3df643b54ea93a17448c722f657e3d68b60
author yhoogstrate
date Wed, 07 Oct 2015 11:38:41 -0400
parents b5c93611d2c5
children
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--- a/tool_dependencies.xml	Thu Sep 10 05:11:49 2015 -0400
+++ b/tool_dependencies.xml	Wed Oct 07 11:38:41 2015 -0400
@@ -1,24 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="featurecounts" version="1.4.6.p1">
-        <repository changeset_revision="42796f06052f" name="package_featurecounts_1_4_6" owner="yhoogstrate" toolshed="https://toolshed.g2.bx.psu.edu" />
-    </package>
-
-    <package name="featurecounts2bed" version="1.0.0">
-        <install version="1.0">
-            <actions>
-                <action type="shell_command">
-                    mkdir $INSTALL_DIR/bin                                            &amp;&amp;
-                    cp $REPOSITORY_INSTALL_DIR/featurecounts2bed.sh $INSTALL_DIR/bin/
-                    </action>
-                <action type="chmod">
-                    <file mode="755">$INSTALL_DIR/bin/featurecounts2bed.sh</file>
-                </action>
-                <action type="set_environment">
-                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
-                    <environment_variable action="prepend_to" name="PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
-                </action>
-            </actions>
-        </install>
+    <package name="featurecounts" version="1.4.6.p5">
+        <repository changeset_revision="600e51134f8d" name="package_featurecounts_1_4_6_p5" owner="yhoogstrate" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>