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comparison flaimapper.xml @ 9:0addbdbc1344 draft default tip

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/flaimapper commit bc077ab7d773c0764642ae8a439d6077ff64fd3c
author erasmus-medical-center
date Fri, 20 Apr 2018 17:13:55 -0400
parents 4f22bd612754
children
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8:4f22bd612754 9:0addbdbc1344
1 <?xml version="1.0" encoding="UTF-8"?> 1 <?xml version="1.0" encoding="UTF-8"?>
2 <tool id="flaimapper" name="FlaiMapper" version="2.5.0-0"> 2 <tool id="flaimapper" name="FlaiMapper" version="3.0.0-0">
3 <description>detects small ncRNA derived fragments in small RNA-Seq data</description> 3 <description>detects small ncRNA derived fragments in small RNA-Seq data</description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="2.5.0">flaimapper</requirement> 5 <requirement type="package" version="3.0.0">flaimapper</requirement>
6 </requirements> 6 </requirements>
7 7
8 <version_command><![CDATA[ flaimapper --version 2>&1 | head -n 1 ]]></version_command> 8 <version_command><![CDATA[ flaimapper --version 2>&1 | head -n 1 ]]></version_command>
9 9
10 <command detect_errors="exit_code"><![CDATA[ 10 <command detect_errors="exit_code"><![CDATA[
132 <param name="output_format" value="2" /> 132 <param name="output_format" value="2" />
133 <param name="parameters" value="filter-parameters.duck.15.txt"/> 133 <param name="parameters" value="filter-parameters.duck.15.txt"/>
134 134
135 <output name="output" file="snord81.flaimapper.duck-15.gtf" /> 135 <output name="output" file="snord81.flaimapper.duck-15.gtf" />
136 </test> 136 </test>
137
138 <!-- Tests a new feature that allows multiple fragments of different size, starting at one identical positions -->
139 <test>
140 <param name="alignment" value="multilength_fragments_per_position_001.bam" ftype="bam" />
141 <param name="output_format" value="1" />
142
143 <output name="output" file="multilength_fragments_per_position_001.txt" />
144 </test>
137 </tests> 145 </tests>
138 146
139 <help><![CDATA[ 147 <help><![CDATA[
140 FlaiMapper wrapper for Galaxy 148 FlaiMapper wrapper for Galaxy
141 ============================= 149 =============================