Mercurial > repos > yhoogstrate > flaimapper

diff tool_dependencies.xml @ 0:d6abffbc9ee7 draft

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planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/flaimapper commit 0f4aa594becc89b07073f7fcccd889e38974e10c-dirty
author yhoogstrate
date Thu, 21 May 2015 07:26:46 -0400
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children 96d135d3c57f
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu May 21 07:26:46 2015 -0400
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+<?xml version="1.0"?>
+<tool_dependency>
+	<package name="pysam" version="0.8.2.1">
+		<repository changeset_revision="b8d22acd3017" name="package_pysam_0_8_2" owner="yhoogstrate" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+	</package>
+	
+	<package name="flaimapper" version="1.1.5">
+		<install version="1.0">
+			<actions>
+				
+				<action type="set_environment_for_install">
+					<repository changeset_revision="b8d22acd3017" name="package_pysam_0_8_2" owner="yhoogstrate" toolshed="https://toolshed.g2.bx.psu.edu">
+						<package name="pysam" version="0.8.2.1" />
+					</repository>
+				</action>
+				
+				<action type="make_directory">$INSTALL_DIR</action>
+				<action type="make_directory">$INSTALL_DIR/bin</action>
+				
+				<action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR:$INSTALL_DIR"/lib/python":$INSTALL_DIR"/lib64/python":$PYSAM_PATH:$PYSAM_PATH"/lib/python":$PYSAM_PATH"/lib64/python" ; easy_install --prefix=$INSTALL_DIR --install-dir=$INSTALL_DIR --script-dir=$INSTALL_DIR/bin $REPOSITORY_INSTALL_DIR"/egg/flaimapper-1.1.5-py2.7.egg"</action>
+				
+				<action type="set_environment">
+					<environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable>
+					<environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+				</action>
+			</actions>
+		</install>
+		
+		<readme>
+			Because I accidentally included too much large files within the
+			GitHub repository of FlaiMapper it is not convenient to use git
+			to pull the latest code from. Downloading simply takes way to
+			long and the package size is unnecessairy large.
+			
+			Instead, I have created an egg that can be installed using
+			easy_install.
+		</readme>
+	</package>
+</tool_dependency>