Mercurial > repos > yhoogstrate > fuma

annotate tool_dependencies.xml @ 0:a4cfaa0e3e5d draft

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planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/fuma commit f56125b28ec44aa28943ed040b7b202fed9c875b-dirty
author yhoogstrate
date Thu, 21 May 2015 09:56:41 -0400
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a4cfaa0e3e5d planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/fuma commit f56125b28ec44aa28943ed040b7b202fed9c875b-dirty
yhoogstrate
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1 <?xml version="1.0"?>
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yhoogstrate
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2 <tool_dependency>
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yhoogstrate
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3 <package name="fuma" version="2.7.1">
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yhoogstrate
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4 <install version="1.0">
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yhoogstrate
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5 <actions>
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yhoogstrate
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6 <action type="make_directory">$INSTALL_DIR/lib/python</action>
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yhoogstrate
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7 <action type="make_directory">$INSTALL_DIR/lib64/python</action>
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yhoogstrate
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8
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yhoogstrate
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9 <action type="shell_command">
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10 git clone https://github.com/yhoogstrate/fuma.git fuma &amp;&amp;
a4cfaa0e3e5d planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/fuma commit f56125b28ec44aa28943ed040b7b202fed9c875b-dirty
yhoogstrate
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11 cd fuma &amp;&amp;
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12 git reset --hard 3d9a0532209d4ad10283cac324788b4fecfd2675 &amp;&amp;
a4cfaa0e3e5d planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/fuma commit f56125b28ec44aa28943ed040b7b202fed9c875b-dirty
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13
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14 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python &amp;&amp;
a4cfaa0e3e5d planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/fuma commit f56125b28ec44aa28943ed040b7b202fed9c875b-dirty
yhoogstrate
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15 python setup.py build &amp;&amp;
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16 python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin
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17 </action>
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18
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19 <action type="set_environment">
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20 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable>
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21 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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22 </action>
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23 </actions>
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24 </install>
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25 <readme>
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26 Downloads and installs Fuma; requires python pip and get to be installed.
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27 </readme>
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28 </package>
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29 </tool_dependency>