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comparison fuma.xml @ 1:54ce44828e1b draft

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planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/fuma commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
author yhoogstrate
date Mon, 01 Jun 2015 06:45:40 -0400
parents a4cfaa0e3e5d
children 86526900cb8f
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0:a4cfaa0e3e5d 1:54ce44828e1b
163 To annotate genes upon the breakpoints you must provide a BED file that contains gene annotations for the user genome build. Make sure **your BED file contains one gene per line**. You should use BED files that contain one exon per line only if you want restrict your analysis to fusion genes detected within exons. 163 To annotate genes upon the breakpoints you must provide a BED file that contains gene annotations for the user genome build. Make sure **your BED file contains one gene per line**. You should use BED files that contain one exon per line only if you want restrict your analysis to fusion genes detected within exons.
164 164
165 UCSC genome browser provides a very simple way of obtaining BED files with one gene per line by selecting their *RefSeq Genes*-track and *knownGene*-table and putting the export format to BED. Galaxy should have a built-in UCSC table browser. 165 UCSC genome browser provides a very simple way of obtaining BED files with one gene per line by selecting their *RefSeq Genes*-track and *knownGene*-table and putting the export format to BED. Galaxy should have a built-in UCSC table browser.
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167 </help> 167 </help>
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169 <citations>
170 </citations>
168 </tool> 171 </tool>