Mercurial > repos > yhoogstrate > fuma

comparison tool_dependencies.xml @ 1:54ce44828e1b draft

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planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/fuma commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
author yhoogstrate
date Mon, 01 Jun 2015 06:45:40 -0400
parents a4cfaa0e3e5d
children 86526900cb8f
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0:a4cfaa0e3e5d 1:54ce44828e1b
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="fuma" version="2.7.1"> 3 <package name="fuma" version="2.7.1">
4 <install version="1.0"> 4 <repository changeset_revision="d728db4c0214" name="package_fuma_2_7_1" owner="yhoogstrate" toolshed="https://toolshed.g2.bx.psu.edu" />
5 <actions>
6 <action type="make_directory">$INSTALL_DIR/lib/python</action>
7 <action type="make_directory">$INSTALL_DIR/lib64/python</action>
8
9 <action type="shell_command">
10 git clone https://github.com/yhoogstrate/fuma.git fuma &amp;&amp;
11 cd fuma &amp;&amp;
12 git reset --hard 3d9a0532209d4ad10283cac324788b4fecfd2675 &amp;&amp;
13
14 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python &amp;&amp;
15 python setup.py build &amp;&amp;
16 python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin
17 </action>
18
19 <action type="set_environment">
20 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable>
21 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
22 </action>
23 </actions>
24 </install>
25 <readme>
26 Downloads and installs Fuma; requires python pip and get to be installed.
27 </readme>
28 </package> 5 </package>
29 </tool_dependency> 6 </tool_dependency>