Mercurial > repos > yhoogstrate > package_featurecounts_1_4_6

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planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_featurecounts_1_4_6 commit 0eac9a776e7bc33275b8ef5e76a4f17b7b5c1259-dirty
author yhoogstrate
date Mon, 01 Jun 2015 07:17:56 -0400
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children 42796f06052f
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<?xml version="1.0"?>
<tool_dependency>
	<package name="featurecounts" version="1.4.6.p1">
		<install version="1.0">
			<actions>
				<action type="shell_command">
					wget http://garr.dl.sourceforge.net/project/subread/subread-1.4.6-p1/subread-1.4.6-p1-source.tar.gz	&amp;&amp;
					tar -zxvf subread-1.4.6-p1-source.tar.gz															&amp;&amp;
					cd subread-1.4.6-p1-source/src/																		&amp;&amp;
					make -f Makefile.Linux																				&amp;&amp;
					cd ../../
				</action>
				<action type="move_file">
					<source>../subread-1.4.6-p1-source/bin/featureCounts</source>
					<destination>$INSTALL_DIR/bin/</destination>
				</action>
				<action type="set_environment">
					<environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
					<!--<environment_variable name="PATH" action="prepend_to">$REPOSITORY_INSTALL_DIR</environment_variable>-->
				</action>
			</actions>
		</install>
		<readme>
			Downloads and installs featureCounts.
			
			Prerequisites:
			- wget
			- gnu-autotools (make)
			- tar
		</readme>
	</package>
</tool_dependency>