Mercurial > repos > yhoogstrate > package_featurecounts_1_4_6_p5
comparison tool_dependencies.xml @ 0:600e51134f8d draft default tip
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 597fa3df643b54ea93a17448c722f657e3d68b60
| author | yhoogstrate |
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| date | Wed, 07 Oct 2015 11:37:42 -0400 |
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| children |
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| -1:000000000000 | 0:600e51134f8d |
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| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <package name="featurecounts" version="1.4.6.p5"> | |
| 4 <install version="1.0"> | |
| 5 <actions> | |
| 6 <action type="download_by_url" | |
| 7 sha256sum="8292ff6420356a5560c4a07f876f785622abbcae9fa54ef6750d102f40f78315">http://downloads.sourceforge.net/project/subread/subread-1.4.6-p5/subread-1.4.6-p5-source.tar.gz</action> | |
| 8 <action type="shell_command"><![CDATA[ | |
| 9 cd src/ && make -f Makefile.Linux | |
| 10 ]]></action> | |
| 11 <action type="move_file"> | |
| 12 <source>bin/featureCounts</source> | |
| 13 <destination>$INSTALL_DIR/bin/</destination> | |
| 14 </action> | |
| 15 <action type="set_environment"> | |
| 16 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | |
| 17 </action> | |
| 18 </actions> | |
| 19 </install> | |
| 20 <readme> | |
| 21 Downloads and installs featureCounts. | |
| 22 http://bioinf.wehi.edu.au/featureCounts/ | |
| 23 </readme> | |
| 24 </package> | |
| 25 </tool_dependency> |