Mercurial > repos > yhoogstrate > package_pysam_0_8_2
annotate tool_dependencies.xml @ 1:f8fecf1f6eba draft default tip
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| author | yhoogstrate |
|---|---|
| date | Fri, 31 Jul 2015 05:42:44 -0400 |
| parents | b8d22acd3017 |
| children |
| rev | line source |
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b8d22acd3017
planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_pysam_0_8_2 commit 0f4aa594becc89b07073f7fcccd889e38974e10c-dirty
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1 <?xml version="1.0"?> |
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b8d22acd3017
planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_pysam_0_8_2 commit 0f4aa594becc89b07073f7fcccd889e38974e10c-dirty
yhoogstrate
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2 <tool_dependency> |
| 1 | 3 <package name="ez_setup" version="0.9"> |
| 4 <repository changeset_revision="10fd2e2a9f2f" name="package_ez_setup_0_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
| 5 </package> | |
| 6 | |
| 7 <package name="pysam" version="0.8.2.1"> | |
| 8 <install version="1.0"> | |
| 9 <actions> | |
| 10 <action md5sum="daf63c1665fa601fc942f050f334a627" type="download_by_url">https://pypi.python.org/packages/source/p/pysam/pysam-0.8.2.1.tar.gz</action> | |
| 11 <action type="set_environment_for_install"> | |
| 12 <repository changeset_revision="10fd2e2a9f2f" name="package_ez_setup_0_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> | |
| 13 <package name="ez_setup" version="0.9" /> | |
| 14 </repository> | |
| 15 </action> | |
| 16 <action type="make_directory">$INSTALL_DIR/lib/python</action> | |
| 17 <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python && python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action> | |
| 18 <action type="set_environment"> | |
| 19 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable> | |
| 20 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | |
| 21 <environment_variable action="set_to" name="PYSAM_PATH">$INSTALL_DIR</environment_variable> | |
| 22 <environment_variable action="set_to" name="PYSAM_ROOT_PATH">$INSTALL_DIR</environment_variable> | |
| 23 </action> | |
| 24 </actions> | |
| 25 </install> | |
| 26 <readme> | |
| 27 Installation of pysam, pyrex and python are required. The installation can be accessed via PYSAM_PATH. | |
| 28 The PYSAM_PATH has to be within the PYTHONPATH to let python automatically load this library. | |
| 29 </readme> | |
| 30 </package> | |
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0
b8d22acd3017
planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_pysam_0_8_2 commit 0f4aa594becc89b07073f7fcccd889e38974e10c-dirty
yhoogstrate
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diff
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31 </tool_dependency> |