Mercurial > repos > yhoogstrate > package_pysam_0_8_2

comparison tool_dependencies.xml @ 0:b8d22acd3017 draft

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planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_pysam_0_8_2 commit 0f4aa594becc89b07073f7fcccd889e38974e10c-dirty
author yhoogstrate
date Thu, 21 May 2015 07:22:19 -0400
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-1:000000000000 0:b8d22acd3017
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="ez_setup" version="0.9">
4 <!--
5 If cross-toolshed depenencies become allowed use the following:
6 <repository changeset_revision="f50b27b88d30" name="package_ez_setup_0_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
7 -->
8 <repository changeset_revision="10fd2e2a9f2f" name="package_ez_setup_0_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
9 </package>
10
11 <package name="pysam" version="0.8.2.1">
12 <install version="1.0">
13 <actions>
14 <action md5sum="daf63c1665fa601fc942f050f334a627" type="download_by_url">https://pypi.python.org/packages/source/p/pysam/pysam-0.8.2.1.tar.gz</action>
15 <action type="set_environment_for_install">
16 <!--
17 If cross-toolshed depenencies become allowed use the following:
18 <repository changeset_revision="f50b27b88d30" name="package_ez_setup_0_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
19 -->
20 <repository changeset_revision="10fd2e2a9f2f" name="package_ez_setup_0_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
21 <package name="ez_setup" version="0.9" />
22 </repository>
23 </action>
24 <action type="make_directory">$INSTALL_DIR/lib/python</action>
25 <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python &amp;&amp; python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action>
26 <action type="set_environment">
27 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable>
28 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
29 <environment_variable action="set_to" name="PYSAM_PATH">$INSTALL_DIR</environment_variable>
30 <environment_variable action="set_to" name="PYSAM_ROOT_PATH">$INSTALL_DIR</environment_variable>
31 </action>
32 </actions>
33 </install>
34 <readme>
35 Installation of pysam, pyrex and python are required. The installation can be accessed via PYSAM_PATH.
36 The PYSAM_PATH has to be within the PYTHONPATH to let python automatically load this library.
37 </readme>
38 </package>
39 </tool_dependency>