Mercurial > repos > yhoogstrate > package_segmentation_fold_1_0_0

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/segmentation_fold_galaxy_wrapper commit b37cb65736e2a6e76b94a9fa12a5887046437e36
author yhoogstrate
date Mon, 03 Aug 2015 08:27:27 -0400
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-1:000000000000 0:f4fce0d27352
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="boost" version="1.57">
4 <repository changeset_revision="a0dd39685fce" name="package_boost_1_57" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package>
6
7 <package name="cmake" version="3.2.3">
8 <repository changeset_revision="1aea698a1c63" name="package_cmake_3_2_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
9 </package>
10
11 <package name="segmentation-fold" version="1.0.0">
12 <install version="1.0">
13 <actions>
14 <action type="shell_command">git clone https://github.com/yhoogstrate/segmentation-fold.git</action>
15 <action type="shell_command">git reset --hard 61db54315e45f2b96a241e319d99b119b26fa072</action>
16
17 <action type="set_environment_for_install">
18 <repository changeset_revision="a0dd39685fce" name="package_boost_1_57" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
19 <package name="boost" version="1.57" />
20 </repository>
21 </action>
22
23 <action type="set_environment_for_install">
24 <repository changeset_revision="1aea698a1c63" name="package_cmake_3_2_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
25 <package name="cmake" version="3.2.3" />
26 </repository>
27 </action>
28
29 <action type="shell_command">
30 cmake -DCMAKE_BUILD_TYPE=release -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR . &amp;&amp;
31 make &amp;&amp;
32 make install
33 </action>
34
35 <action type="set_environment">
36 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
37 <environment_variable action="set_to" name="SEGMENTATION_FOLD_DEFAULT_XML">$INSTALL_DIR/share/segmentation-fold/segments.xml</environment_variable>
38 </action>
39 </actions>
40 </install>
41 <readme>
42 Installation of segmentation-fold requires:
43 - git
44 - libboost (via toolshed)
45 - CMake (via toolshed)
46 - c++11 compiler: g++ or clang
47 </readme>
48 </package>
49 </tool_dependency>