Mercurial > repos > yhoogstrate > package_segmentation_fold_1_1_0

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/segmentation_fold_galaxy_wrapper commit 4f43c60fd8d3827382fa55c7b6174fa925d7f8e7
author yhoogstrate
date Thu, 03 Dec 2015 03:21:46 -0500
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-1:000000000000 0:2c69127ea0cd
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="boost" version="1.57">
4 <repository changeset_revision="a0dd39685fce" name="package_boost_1_57" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package>
6
7 <package name="cmake" version="3.2.3">
8 <repository changeset_revision="1aea698a1c63" name="package_cmake_3_2_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
9 </package>
10
11 <package name="segmentation-fold" version="1.1.0">
12 <install version="1.0">
13 <actions>
14 <action type="download_by_url">https://github.com/yhoogstrate/segmentation-fold/archive/206125e2ff26c21bc5e5e4962c6f51e87ac53ad2.tar.gz</action>
15
16 <action type="set_environment_for_install">
17 <repository changeset_revision="a0dd39685fce" name="package_boost_1_57" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
18 <package name="boost" version="1.57" />
19 </repository>
20 </action>
21
22 <action type="set_environment_for_install">
23 <repository changeset_revision="1aea698a1c63" name="package_cmake_3_2_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
24 <package name="cmake" version="3.2.3" />
25 </repository>
26 </action>
27
28 <action type="shell_command">
29 cmake -DCMAKE_BUILD_TYPE=release -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR . &amp;&amp;
30 make &amp;&amp;
31 make install
32 </action>
33
34 <action type="set_environment">
35 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
36 <environment_variable action="set_to" name="SEGMENTATION_FOLD_DEFAULT_XML">$INSTALL_DIR/share/segmentation-fold/segments.xml</environment_variable>
37 </action>
38 </actions>
39 </install>
40 <readme>
41 Installation of segmentation-fold requires:
42 - git
43 - libboost (via toolshed)
44 - CMake (via toolshed)
45 - c++11 compiler: g++ or clang
46 </readme>
47 </package>
48 </tool_dependency>