Mercurial > repos > yhoogstrate > segmentation_fold
diff utils_estimate-energy.xml @ 6:4d16cf9414cf draft default tip
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/segmentation_fold commit 3a3c1d069e0a079d8ea7c0b4ac856ef24141b1aa
| author | erasmus-medical-center |
|---|---|
| date | Fri, 24 Feb 2017 04:18:22 -0500 |
| parents | b7cf9b172cfe |
| children |
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--- a/utils_estimate-energy.xml Wed Aug 03 04:54:40 2016 -0400 +++ b/utils_estimate-energy.xml Fri Feb 24 04:18:22 2017 -0500 @@ -5,20 +5,10 @@ <import>macros.xml</import> </macros> - <requirements> - <requirement type="package" version="2.7.10">python</requirement> - <requirement type="package" version="1.9">numpy</requirement> - <requirement type="package" version="0.8.2.1">pysam</requirement> - <requirement type="package" version="0.6.1">htseq</requirement> - <requirement type="package" version="2.1.0">segmentation-fold-utils</requirement> - - <requirement type="package" version="1.6.5">segmentation-fold</requirement> - </requirements> - <expand macro="stdio" /> + <expand macro="requirements" /> + <expand macro="version_command" /> - <version_command>echo $(@VERSION_COMMAND_SMF@)", "$(@VERSION_COMMAND_UTILS@)</version_command> - - <command><![CDATA[ + <command detect_errors="aggressive"><![CDATA[ segmentation-fold-utils estimate-energy -T \${GALAXY_SLOTS:-2} @@ -26,7 +16,7 @@ #if str($parameters.use_custom_xml) == "true" "${parameters.input_xml}" #else - "\$SEGMENTATION_FOLD_DEFAULT_XML" + "\$(segmentation-fold -X)" #end if -p $precision @@ -45,7 +35,7 @@ type="boolean" truevalue="true" falsevalue="false" - selected="false" + checked="false" label="Use segment definition from history" /> <when value="false" />