--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README.rst	Thu Nov 05 10:00:19 2015 -0500
@@ -0,0 +1,102 @@
+VarScan2 mpileup2snp wrapper for Galaxy
+=======================================
+
+http://sourceforge.net/projects/varscan/
+
+This wrapper is optimized for direct access to BAM files such that the
+big mpileup files are not saved.
+
+Development
+-----------
+
+Repository-Maintainer: Youri Hoogstrate
+
+Repository-Development: https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools
+
+
+License
+-------
+
+**VarScan2**:
+
+Non-Profit Open Software License 3.0 (Non-Profit OSL 3.0): http://sourceforge.net/directory/os:linux/license:nposl3/freshness:recently-updated/ http://opensource.org/licenses/NPOSL-3.0
+
+**samtools**:
+
+MIT/Expat License: https://raw.githubusercontent.com/samtools/samtools/develop/LICENSE
+
+    The MIT/Expat License
+
+    Copyright (C) 2008-2014 Genome Research Ltd.
+
+    Permission is hereby granted, free of charge, to any person obtaining a copy
+    of this software and associated documentation files (the "Software"), to deal
+    in the Software without restriction, including without limitation the rights
+    to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+    copies of the Software, and to permit persons to whom the Software is
+    furnished to do so, subject to the following conditions:
+
+    The above copyright notice and this permission notice shall be included in
+    all copies or substantial portions of the Software.
+
+    THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+    IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+    FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
+    THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+    LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
+    FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
+    DEALINGS IN THE SOFTWARE.
+
+    [The use of a range of years within a copyright notice in this distribution
+    should be interpreted as being equivalent to a list of years including the
+    first and last year specified and all consecutive years between them.
+
+    For example, a copyright notice that reads "Copyright (C) 2005, 2007-2009,
+    2011-2012" should be interpreted as being identical to a notice that reads
+    "Copyright (C) 2005, 2007, 2008, 2009, 2011, 2012" and a copyright notice
+    that reads "Copyright (C) 2005-2012" should be interpreted as being identical
+    to a notice that reads "Copyright (C) 2005, 2006, 2007, 2008, 2009, 2010,
+    2011, 2012".]
+
+**samtools-parallel-mpileup**:
+
+MIT License: https://raw.githubusercontent.com/mydatascience/parallel-mpileup/master/samtools-0.1.19/COPYING
+
+The MIT License
+
+    Copyright (c) 2008-2009 Genome Research Ltd.
+
+    Permission is hereby granted, free of charge, to any person obtaining a copy
+    of this software and associated documentation files (the "Software"), to deal
+    in the Software without restriction, including without limitation the rights
+    to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+    copies of the Software, and to permit persons to whom the Software is
+    furnished to do so, subject to the following conditions:
+
+    The above copyright notice and this permission notice shall be included in
+    all copies or substantial portions of the Software.
+
+    THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+    IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+    FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+    AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+    LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+    OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+    THE SOFTWARE.
+
+**This wrapper**:
+
+    Copyright (C) 2013-2014  Youri Hoogstrate
+
+    This program is free software: you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with this program.  If not, see <http://www.gnu.org/licenses/>.