Mercurial > repos > ynewton > extract_tumor_vs_normal_tcga_ids
view get_normal_vs_tumor_sample_ids.xml @ 3:28d795d45ca2 draft
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author | ynewton |
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date | Thu, 17 Jan 2013 20:22:07 -0500 |
parents | 82e5ee13fe5a |
children | 1728895db87e |
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<tool id="extract_tumor_vs_normal_ID_lists" name="Extract_tumor_vs_normal_TCGA_IDs" version="1.0.0"> <description>Extract normal vs. tumor IDs for TCGA samples</description> <command interpreter="python">get_normal_vs_tumor_sample_ids.py --in_matrix $tableData --out_normals $outfile1 --out_tumor $outfile2 </command> <inputs> <param name="tableData" format="tabular" type="data" label="Input data"/> </inputs> <outputs> <data name="outfile1" format="tabular"/> <data name="outfile2" format="tabular"/> </outputs> <help> **What it does** Takes a matrix of TCGA samples and extract two lists: normal sample IDs and tumor sample IDs. </help> </tool>