# HG changeset patch
# User ynewton
# Date 1358471305 18000
# Node ID 5240f8985481304d8ec78447a8c1589ab6ccb6ce
# Parent  72b0123a8587661c942e3c22882c02871ca5ba35
Uploaded

diff -r 72b0123a8587 -r 5240f8985481 get_normal_vs_tumor_sample_ids.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/get_normal_vs_tumor_sample_ids.xml	Thu Jan 17 20:08:25 2013 -0500
@@ -0,0 +1,18 @@
+<tool id="extract_tumor_vs_normal_ID_lists" name="Extract tumor vs. normal TCGA IDs" version="1.0.0">
+  <description>Extract normal vs. tumor IDs for TCGA samples</description>
+  <command interpreter="python">get_normal_vs_tumor_sample_ids.py --in_matrix $tableData --out_normals $outfile1 --out_tumor $outfile2
+  </command>
+  <inputs>
+	  <param name="tableData" format="tabular" type="data" label="Input data"/>
+  </inputs>
+  <outputs>
+      <data name="outfile1" format="tabular"/>
+      <data name="outfile2" format="tabular"/>
+  </outputs>
+  <help>
+**What it does**
+
+Takes a matrix of TCGA samples and extract two lists: normal sample IDs and tumor sample IDs.
+
+  </help>   
+</tool>
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