Mercurial > repos > yokofakun > jvarkit

comparison vcffilterjs.xml @ 6:95eb039c4811 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author yokofakun
date Wed, 25 Feb 2015 09:49:06 -0500
parents
children
comparison
equal deleted inserted replaced
5:852ba90164b3 6:95eb039c4811
1 <?xml version="1.0"?>
2 <tool hidden="false" id="com.github.lindenb.jvarkit.tools.vcffilterjs.VCFFilterJS" version="ffd9de89f479bfb81a94c9a92655a14b81d95976" name="vcffilterjs">
3 <requirements>
4 <requirement type="binary">java</requirement>
5 </requirements>
6 <command>java -cp commons-jexl-2.1.1.jar:commons-logging-1.1.1.jar:htsjdk-1.129.jar:snappy-java-1.0.3-rc3.jar:vcffilterjs.jar com.github.lindenb.jvarkit.tools.vcffilterjs.VCFFilterJS -e ${expression} -o ${output} ${input}</command>
7 <inputs>
8 <param format="vcf" name="input" type="data" label="VCF input"/>
9 <param name="expression" type="text"/>
10 </inputs>
11 <outputs>
12 <data format="vcf" name="output"/>
13 </outputs>
14 <stdio>
15 <exit_code range="1:"/>
16 <exit_code range=":-1"/>
17 </stdio>
18 <help>
19
20
21 **Inputs**
22
23
24
25 **Outputs**
26
27
28 **Citation**
29
30 If you use this Galaxy tool in work leading to a scientific publication please
31 cite: Pierre Lindenbaum PhD @yokofakun.
32
33 </help>
34 </tool>