Mercurial > repos > yokofakun > jvarkit

comparison jvarkit/vcftail.xml @ 8:98106098dcd1 draft

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author yokofakun
date Fri, 27 Feb 2015 09:52:06 -0500
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7:e5723e64ea43 8:98106098dcd1
1 <?xml version="1.0"?>
2 <tool xmlns:date="http://exslt.org/dates-and-times" hidden="false" id="com.github.lindenb.jvarkit.tools.misc.VcfTail" version="f21676175ed7d18ec569f34973dd2c03c23ab1e9" name="vcftail">
3 <!--Date: 2015-02-27T15:54:03+01:00-->
4 <description>Print first variants of a VCF</description>
5 <requirements>
6 <requirement type="binary">java</requirement>
7 </requirements>
8 <command>(gunzip -c ${input} || cat ${input}) | java -cp $__tool_directory__/commons-jexl-2.1.1.jar:$__tool_directory__/commons-logging-1.1.1.jar:$__tool_directory__/htsjdk-1.128.jar:$__tool_directory__/snappy-java-1.0.3-rc3.jar:$__tool_directory__/vcftail.jar com.github.lindenb.jvarkit.tools.misc.VcfTail -n '${num}' -o ${output}.vcf.gz &amp;&amp; mv ${output}.vcf.gz ${output}</command>
9 <inputs>
10 <param format="vcf" name="input" type="data" label="VCF input"/>
11 <param name="num" type="integer" label="Number of variants" min="0" value="10"/>
12 </inputs>
13 <outputs>
14 <data format="vcf" name="output"/>
15 </outputs>
16 <stdio>
17 <exit_code range="1:"/>
18 <exit_code range=":-1"/>
19 </stdio>
20 <help>
21
22 **Inputs**
23
24
25 - **VCF input** : VCF input
26
27 - **Number of variants** : Number of variants
28
29
30 **Outputs**
31
32
33 - **output** : output
34
35
36 **Wiki**
37
38 https://github.com/lindenb/jvarkit/wiki/VcfHead
39
40 -----
41
42
43 **Author**
44
45 Pierre Lindenbaum PhD @yokofakun
46
47 **Citation**
48
49 If you use this Galaxy tool in work leading to a scientific publication please
50 cite: Pierre Lindenbaum PhD https://github.com/lindenb/jvarkit
51
52 **Contribute**
53
54 - Issue Tracker: http://github.com/lindenb/jvarkit/issues`
55 - Source Code: http://github.com/lindenb/jvarkit
56
57 **License**
58
59 The project is licensed under the MIT license.
60
61 **Compilation**
62
63 Date: 2015-02-27T15:54:03+01:00
64 Version: f21676175ed7d18ec569f34973dd2c03c23ab1e9
65 </help>
66 </tool>