--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/jvarkit/vcffilterjs.xml	Fri Feb 27 09:52:06 2015 -0500
@@ -0,0 +1,72 @@
+<?xml version="1.0"?>
+<tool xmlns:date="http://exslt.org/dates-and-times" hidden="false" id="com.github.lindenb.jvarkit.tools.vcffilterjs.VCFFilterJS" version="f21676175ed7d18ec569f34973dd2c03c23ab1e9" name="vcffilterjs">
+  <!--Date: 2015-02-27T15:54:02+01:00-->
+  <description>Filters a VCF with Javascript</description>
+  <requirements>
+    <requirement type="binary">java</requirement>
+  </requirements>
+  <command>(gunzip -c ${input} || cat ${input}) | java -cp  $__tool_directory__/commons-jexl-2.1.1.jar:$__tool_directory__/commons-logging-1.1.1.jar:$__tool_directory__/htsjdk-1.128.jar:$__tool_directory__/snappy-java-1.0.3-rc3.jar:$__tool_directory__/vcffilterjs.jar com.github.lindenb.jvarkit.tools.vcffilterjs.VCFFilterJS -e '${expression}' -o ${output}.vcf.gz &amp;&amp; mv  ${output}.vcf.gz ${output} </command>
+  <inputs>
+		 <param format="vcf" name="input" type="data" label="VCF input"/> 
+		<param name="expression" type="text" label="javascript expression">
+			<sanitizer>
+					<valid initial="string.printable">
+         				<add source="'" target="\'"/>
+       			 	</valid>
+			</sanitizer>
+		</param>
+	</inputs>
+  <outputs>
+    <data format="vcf" name="output"/>
+  </outputs>
+  <stdio>
+    <exit_code range="1:"/>
+    <exit_code range=":-1"/>
+  </stdio>
+  <help>
+
+**Inputs**
+
+
+- **VCF input** :  VCF input
+
+- **javascript expression** :  javascript expression
+
+
+**Outputs**
+
+
+- **output** :  output
+
+
+**Wiki**
+
+https://github.com/lindenb/jvarkit/wiki/VCFFilterJS
+
+-----
+
+
+**Author**
+
+Pierre Lindenbaum PhD @yokofakun
+
+**Citation**
+
+If you use this Galaxy tool in work leading to a scientific publication please
+cite: Pierre Lindenbaum PhD  https://github.com/lindenb/jvarkit
+
+**Contribute**
+
+- Issue Tracker: http://github.com/lindenb/jvarkit/issues`
+- Source Code: http://github.com/lindenb/jvarkit
+
+**License**
+
+The project is licensed under the MIT license.
+
+**Compilation**
+
+Date: 2015-02-27T15:54:02+01:00
+Version: f21676175ed7d18ec569f34973dd2c03c23ab1e9
+</help>
+</tool>