Mercurial > repos > yokofakun > jvarkit

changeset 4:f8bf01a6eef7 draft

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Uploaded
author yokofakun
date Wed, 25 Feb 2015 09:12:15 -0500
parents c11b78c7f187
children 852ba90164b3
files jvarkit/commons-jexl-2.1.1.jar jvarkit/commons-logging-1.1.1.jar jvarkit/htsjdk-1.129.jar jvarkit/snappy-java-1.0.3-rc3.jar jvarkit/vcffilterjs.jar jvarkit/vcffilterjs.xml section.xml
diffstat 7 files changed, 27 insertions(+), 0 deletions(-) [+]
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Binary file jvarkit/commons-jexl-2.1.1.jar has changed
Binary file jvarkit/commons-logging-1.1.1.jar has changed
Binary file jvarkit/htsjdk-1.129.jar has changed
Binary file jvarkit/snappy-java-1.0.3-rc3.jar has changed
Binary file jvarkit/vcffilterjs.jar has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/jvarkit/vcffilterjs.xml	Wed Feb 25 09:12:15 2015 -0500
@@ -0,0 +1,22 @@
+<?xml version="1.0"?>
+<tool hidden="false" id="com.github.lindenb.jvarkit.tools.vcffilterjs.VCFFilterJS" version="ffd9de89f479bfb81a94c9a92655a14b81d95976" name="vcffilterjs"><requirements><requirement type="binary">java</requirement></requirements>java -cp commons-jexl-2.1.1.jar:commons-logging-1.1.1.jar:htsjdk-1.129.jar:snappy-java-1.0.3-rc3.jar:vcffilterjs.jar com.github.lindenb.jvarkit.tools.vcffilterjs.VCFFilterJS -e ${expression} -o ${output} ${input}<inputs>
+		<param format="vcf" name="input" type="data" label="VCF input"/>
+		<param name="expression" type="text"/>
+	</inputs><inputs>
+		<data format="vcf" name="output"/>
+	</inputs><stdio><exit_code range="1:"/><exit_code range=":-1"/></stdio><help>
+
+
+**Inputs**
+
+
+
+**Outputs**
+
+
+**Citation**
+
+If you use this Galaxy tool in work leading to a scientific publication please
+cite: Pierre Lindenbaum PhD @yokofakun.
+	 
+	 </help></tool>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/section.xml	Wed Feb 25 09:12:15 2015 -0500
@@ -0,0 +1,5 @@
+<?xml version="1.0"?>
+<section id="jvarkit" name="jvarkit: java utilities for bioinformatics">
+  <tool file="jvarkit/vcffilterjs.xml"/>
+</section>
+