Mercurial > repos > youngkim > ezbamqc

annotate cshl_geneGTF.loc.sample @ 17:161866cee2a2

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
wrapper rename
author youngkim
date Wed, 30 Mar 2016 13:28:47 -0400
parents 0c5c414c3407
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
5
0c5c414c3407 Uploaded
cshl-bsr
parents:
diff changeset
1 ##
0c5c414c3407 Uploaded
cshl-bsr
parents:
diff changeset
2 ## Location of gene annotations GTF
0c5c414c3407 Uploaded
cshl-bsr
parents:
diff changeset
3 ##
0c5c414c3407 Uploaded
cshl-bsr
parents:
diff changeset
4 ## Format is:
0c5c414c3407 Uploaded
cshl-bsr
parents:
diff changeset
5 ## value<TAB>Name<TAB>dbkey<TAB>ID
0c5c414c3407 Uploaded
cshl-bsr
parents:
diff changeset
6 ##
0c5c414c3407 Uploaded
cshl-bsr
parents:
diff changeset
7 ## Name can contain spaces
0c5c414c3407 Uploaded
cshl-bsr
parents:
diff changeset
8
0c5c414c3407 Uploaded
cshl-bsr
parents:
diff changeset
9 /localdata1/annotations/GTF/latest/hg19_refGene.gtf hg19 UCSC refSeq hg19 hg19_refgene
0c5c414c3407 Uploaded
cshl-bsr
parents:
diff changeset
10 /localdata1/annotations/GTF/latest/hg18_refGene.gtf hg18 UCSC refSeq hg18 hg18_refgene
0c5c414c3407 Uploaded
cshl-bsr
parents:
diff changeset
11 /localdata1/annotations/GTF/latest/mm10_refGene.gtf mm10 UCSC refSeq mm10 mm10_refgene
0c5c414c3407 Uploaded
cshl-bsr
parents:
diff changeset
12 /localdata1/annotations/GTF/latest/mm9_refGene.gtf mm9 UCSC refSeq mm9 mm9_refgene
0c5c414c3407 Uploaded
cshl-bsr
parents:
diff changeset
13 /localdata1/annotations/GTF/latest/dm3_refGene.gtf dm3 UCSC refSeq dm3 dm3_refgene
0c5c414c3407 Uploaded
cshl-bsr
parents:
diff changeset
14 /localdata1/annotations/GTF/refseq_2015_01_20/rn5_refGene.gtf rn5 UCSC refSeq rn5 rn5_refgene
0c5c414c3407 Uploaded
cshl-bsr
parents:
diff changeset
15 #/localdata1/annotations/GTF/latest/rn4_refGene.gtf rn4 UCSC refSeq rn4 rn4_refgene
0c5c414c3407 Uploaded
cshl-bsr
parents:
diff changeset
16 #/localdata1/annotations/GTF/latest/ce6_refGene.gtf ce6 UCSC refSeq ce6 ce6_refgene
0c5c414c3407 Uploaded
cshl-bsr
parents:
diff changeset
17 #/localdata1/annotations/GTF/latest/ce10_refGene.gtf ce10 UCSC refSeq ce10 ce10_refgene
0c5c414c3407 Uploaded
cshl-bsr
parents:
diff changeset
18 #/localdata1/annotations/GTF/igenomes_2014_08_28/ZmAGPv2_iGenome_genes.gtf Maize (AGPv2) iGenomes gene info ZmAGPv2 ZmAGPv2_genes
0c5c414c3407 Uploaded
cshl-bsr
parents:
diff changeset
19 #/localdata1/annotations/GTF/igenomes_2014_08_28/ZmAGPv3_iGenome_genes.gtf Maize (AGPv3) iGenomes gene info ZmAGPv3 ZmAGPv3_genes
0c5c414c3407 Uploaded
cshl-bsr
parents:
diff changeset
20 #/localdata1/annotations/GTF/igenomes_2014_08_28/tair10_iGenome_genes.gtf Arabidopsis (TAIR10) iGenomes gene info