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annotate cshl_geneGTF.loc.sample @ 15:28cebcc7f774

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author cshl-bsr
date Wed, 30 Mar 2016 12:15:18 -0400
parents 0c5c414c3407
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1 ##
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2 ## Location of gene annotations GTF
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3 ##
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4 ## Format is:
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5 ## value<TAB>Name<TAB>dbkey<TAB>ID
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6 ##
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7 ## Name can contain spaces
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9 /localdata1/annotations/GTF/latest/hg19_refGene.gtf hg19 UCSC refSeq hg19 hg19_refgene
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10 /localdata1/annotations/GTF/latest/hg18_refGene.gtf hg18 UCSC refSeq hg18 hg18_refgene
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11 /localdata1/annotations/GTF/latest/mm10_refGene.gtf mm10 UCSC refSeq mm10 mm10_refgene
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12 /localdata1/annotations/GTF/latest/mm9_refGene.gtf mm9 UCSC refSeq mm9 mm9_refgene
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13 /localdata1/annotations/GTF/latest/dm3_refGene.gtf dm3 UCSC refSeq dm3 dm3_refgene
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14 /localdata1/annotations/GTF/refseq_2015_01_20/rn5_refGene.gtf rn5 UCSC refSeq rn5 rn5_refgene
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15 #/localdata1/annotations/GTF/latest/rn4_refGene.gtf rn4 UCSC refSeq rn4 rn4_refgene
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16 #/localdata1/annotations/GTF/latest/ce6_refGene.gtf ce6 UCSC refSeq ce6 ce6_refgene
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17 #/localdata1/annotations/GTF/latest/ce10_refGene.gtf ce10 UCSC refSeq ce10 ce10_refgene
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18 #/localdata1/annotations/GTF/igenomes_2014_08_28/ZmAGPv2_iGenome_genes.gtf Maize (AGPv2) iGenomes gene info ZmAGPv2 ZmAGPv2_genes
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19 #/localdata1/annotations/GTF/igenomes_2014_08_28/ZmAGPv3_iGenome_genes.gtf Maize (AGPv3) iGenomes gene info ZmAGPv3 ZmAGPv3_genes
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20 #/localdata1/annotations/GTF/igenomes_2014_08_28/tair10_iGenome_genes.gtf Arabidopsis (TAIR10) iGenomes gene info