annotate ezBAMQC/src/htslib/cram/string_alloc.h @ 15:28cebcc7f774

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author cshl-bsr
date Wed, 30 Mar 2016 12:15:18 -0400
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1 /*
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2 Copyright (c) 2010 Genome Research Ltd.
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3 Author: Andrew Whitwham <aw7@sanger.ac.uk>
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4
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5 Redistribution and use in source and binary forms, with or without
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6 modification, are permitted provided that the following conditions are met:
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7
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8 1. Redistributions of source code must retain the above copyright notice,
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9 this list of conditions and the following disclaimer.
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10
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11 2. Redistributions in binary form must reproduce the above copyright notice,
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12 this list of conditions and the following disclaimer in the documentation
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13 and/or other materials provided with the distribution.
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14
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15 3. Neither the names Genome Research Ltd and Wellcome Trust Sanger
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16 Institute nor the names of its contributors may be used to endorse or promote
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17 products derived from this software without specific prior written permission.
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18
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19 THIS SOFTWARE IS PROVIDED BY GENOME RESEARCH LTD AND CONTRIBUTORS "AS IS" AND
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20 ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
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21 WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
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22 DISCLAIMED. IN NO EVENT SHALL GENOME RESEARCH LTD OR CONTRIBUTORS BE LIABLE
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23 FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
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24 DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
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25 SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
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26 CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
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27 OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
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28 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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29 */
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30
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31 #ifndef _STRING_ALLOC_H_
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32 #define _STRING_ALLOC_H_
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33
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34 #ifdef __cplusplus
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35 extern "C" {
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36 #endif
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37
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38 #include <stdlib.h>
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39
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40 /*
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41 * A pooled string allocator intended to cut down on the
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42 * memory overhead of many small string allocations.
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43 *
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44 * Andrew Whitwham, September 2010.
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45 */
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46
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47 typedef struct {
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48 char *str;
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49 size_t used;
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50 } string_t;
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51
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52 typedef struct {
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53 size_t max_length;
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54 size_t nstrings;
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55 string_t *strings;
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56 } string_alloc_t;
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57
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58 string_alloc_t *string_pool_create(size_t max_length);
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59 void string_pool_destroy(string_alloc_t *a_str);
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60 char *string_alloc(string_alloc_t *a_str, size_t length);
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61 char *string_dup(string_alloc_t *a_str, char *instr);
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62 char *string_ndup(string_alloc_t *a_str, char *instr, size_t len);
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63
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64 #endif
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65
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66 #ifdef __cplusplus
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67 }
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68 #endif
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69