annotate ezBAMQC/src/htslib/cram/pooled_alloc.h @ 9:6610eedd9fae

Uploaded
author cshl-bsr
date Wed, 30 Mar 2016 12:11:46 -0400
parents dfa3745e5fd8
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
1 /*
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
2 Copyright (c) 2009 Genome Research Ltd.
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
3 Author: Rob Davies <rmd@sanger.ac.uk>
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
4
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
5 Redistribution and use in source and binary forms, with or without
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
6 modification, are permitted provided that the following conditions are met:
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
7
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
8 1. Redistributions of source code must retain the above copyright notice,
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
9 this list of conditions and the following disclaimer.
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
10
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
11 2. Redistributions in binary form must reproduce the above copyright notice,
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
12 this list of conditions and the following disclaimer in the documentation
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
13 and/or other materials provided with the distribution.
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
14
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
15 3. Neither the names Genome Research Ltd and Wellcome Trust Sanger
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
16 Institute nor the names of its contributors may be used to endorse or promote
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
17 products derived from this software without specific prior written permission.
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
18
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
19 THIS SOFTWARE IS PROVIDED BY GENOME RESEARCH LTD AND CONTRIBUTORS "AS IS" AND
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
20 ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
21 WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
22 DISCLAIMED. IN NO EVENT SHALL GENOME RESEARCH LTD OR CONTRIBUTORS BE LIABLE
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
23 FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
24 DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
25 SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
26 CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
27 OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
28 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
29 */
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
30
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
31 #ifndef _POOLED_ALLOC_H_
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
32 #define _POOLED_ALLOC_H_
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
33
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
34 /*
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
35 * Implements a pooled block allocator where all items are the same size,
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
36 * but we need many of them.
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
37 */
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
38 typedef struct {
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
39 void *pool;
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
40 size_t used;
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
41 } pool_t;
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
42
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
43 typedef struct {
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
44 size_t dsize;
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
45 size_t npools;
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
46 pool_t *pools;
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
47 void *free;
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
48 } pool_alloc_t;
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
49
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
50 pool_alloc_t *pool_create(size_t dsize);
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
51 void pool_destroy(pool_alloc_t *p);
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
52 void *pool_alloc(pool_alloc_t *p);
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
53 void pool_free(pool_alloc_t *p, void *ptr);
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
54
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
55
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
56 #endif /*_POOLED_ALLOC_H_*/