Mercurial > repos > youngkim > ezbamqc

annotate ezBAMQC/test-data/output/data/smp1.ReadLen_plot.r @ 20:9de3bbec2479 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author youngkim
date Thu, 31 Mar 2016 10:10:37 -0400
parents dfa3745e5fd8
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
1 png("/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp1.readlen_profile.png",width=500,height=500,units="px")
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
2 readlen_val=c(67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100)
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
3 readlen_count=c(182,173,267,238,308,340,386,354,392,415,421,399,419,456,470,469,496,483,489,488,529,499,514,561,748,813,751,827,863,912,958,1648,1875,47529)
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
4 plot(readlen_val,(readlen_count/79258),pch=20,xlab="Mapped Read Length",ylab="Proportion",col="blue")
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
5 dev.state=dev.off()