annotate ezBAMQC/test-data/output/data/smp2.TransCoverage.r @ 20:9de3bbec2479 draft default tip

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author youngkim
date Thu, 31 Mar 2016 10:10:37 -0400
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1 png('/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.TransCoverage.png',width=500,height=500,units='px')
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youngkim
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2 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youngkim
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3 Fn = ecdf(a)
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4 max_x = round(log(max(knots(Fn)),2),0)
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5 xx = c(0,2^seq(0,max_x,by=2))
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6 y=Fn(xx)
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7 xlog = log(xx[2:length(xx)],base=2)
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8 plot(x=c(-1,xlog),y=y,xaxt = 'n',type="b",col="blue",pch=20,xlab="Number of Reads",ylab="Cumulative proportion of Genes")
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9 axis(1,at = c(-1,seq(0,max_x,by=2)),labels=c(0,2^seq(0,max_x,by=2)))
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10 dev.state = dev.off()