annotate ezBAMQC/test-data/output/data/smp2.res.txt @ 20:9de3bbec2479 draft default tip

Uploaded
author youngkim
date Thu, 31 Mar 2016 10:10:37 -0400
parents dfa3745e5fd8
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
1 filename /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/data/smp2.res.txt
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
2 is_pairEnd 0
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
3 clipping_plot_file /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.clipping_profile.png
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
4 mapq_plot_file /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.mapq_profile.png
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
5 mapq_file /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/data/smp2.mapq_profile.xls
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
6 read_cov_plot_file /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.geneBodyCoverage.png
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
7 trans_cov_plot_file /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.TransCoverage.png
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
8 insert_plot_file /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.inner_distance_plot.png
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
9 insert_file /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/data/smp2.inner_distance_freq.txt
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
10 read_dist_plot_file1 /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.read_distr.png
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
11 read_dist_plot_file2 /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.read_distr_pie.png
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
12 readLen_plot_file /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.readlen_profile.png
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
13 geneCount_file /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/data/smp2.geneAbundance.txt
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
14 seqDeDup_percent 0.000000
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
15 posDeDup_percent 0.000000
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
16 no_clipping 0
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
17 no_rRNA 0
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
18 total_reads 80603
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
19 uniq_mapped_reads 69389
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
20 multi_mapped_reads 11214
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
21 unmapped_reads 0
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
22 low_qual 0
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
23 low_qual_read1 0
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
24 low_qual_read2 0
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
25 pcr_dup 0
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
26 rRNA_read 5939
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
27 cds_read 22143
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
28 utr5_read 1293
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
29 utr3_read 15499
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
30 intron_read 7798
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
31 itgup1k_read 156
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
32 itgdn1k_read 511
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
33 itg_read 21398
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
34 unmapped_read1 0
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
35 unmapped_read2 0
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
36 mapped_read1 0
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
37 mapped_read2 0
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
38 forward_read 34065
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
39 reverse_read 35324
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
40 paired_reads 0
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
41 mapped_plus_minus 0
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
42 mapped_plus_plus 0
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
43 mapped_minus_plus 0
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
44 mapped_minus_minus 0
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
45 ins_read 0
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
46 del_read 0
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
47 noSplice 56765
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
48 splice 12624
dfa3745e5fd8 Uploaded
youngkim
parents:
diff changeset
49 paired_diff_chrom 0