ezbamqc: ezBAMQC/src/htslib/configure comparison

comparison ezBAMQC/src/htslib/configure @ 0:dfa3745e5fd8

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author	youngkim
date	Thu, 24 Mar 2016 17:12:52 -0400
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--1:000000000000
+:dfa3745e5fd8
+#! /bin/sh
+# Guess values for system-dependent variables and create Makefiles.
+# Generated by GNU Autoconf 2.68 for HTSlib 1.2.1.
+#
+# Report bugs to <samtools-help@lists.sourceforge.net>.
+#
+#
+# Copyright (C) 1992, 1993, 1994, 1995, 1996, 1998, 1999, 2000, 2001,
+# 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010 Free Software
+# Foundation, Inc.
+#
+#
+# This configure script is free software; the Free Software Foundation
+# gives unlimited permission to copy, distribute and modify it.
+#
+# Portions copyright (C) 2015 Genome Research Ltd.
+#
+# This configure script is free software: you are free to change and
+# redistribute it.  There is NO WARRANTY, to the extent permitted by law.
+## -------------------- ##
+## M4sh Initialization. ##
+## -------------------- ##
+# Be more Bourne compatible
+DUALCASE=1; export DUALCASE # for MKS sh
+if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then :
+emulate sh
+NULLCMD=:
+# Pre-4.2 versions of Zsh do word splitting on ${1+"$@"}, which
+# is contrary to our usage.  Disable this feature.
+alias -g '${1+"$@"}'='"$@"'
+setopt NO_GLOB_SUBST
+else
+case `(set -o) 2>/dev/null` in #(
+*posix*) :
+set -o posix ;; #(
+*) :
+;;
+esac
+fi
+as_nl='
+'
+export as_nl
+# Printing a long string crashes Solaris 7 /usr/bin/printf.
+as_echo='\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\'
+as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo
+as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo$as_echo
+# Prefer a ksh shell builtin over an external printf program on Solaris,
+# but without wasting forks for bash or zsh.
+if test -z "$BASH_VERSION$ZSH_VERSION" \
+&& (test "X`print -r -- $as_echo`" = "X$as_echo") 2>/dev/null; then
+as_echo='print -r --'
+as_echo_n='print -rn --'
+elif (test "X`printf %s $as_echo`" = "X$as_echo") 2>/dev/null; then
+as_echo='printf %s\n'
+as_echo_n='printf %s'
+else
+if test "X`(/usr/ucb/echo -n -n $as_echo) 2>/dev/null`" = "X-n $as_echo"; then
+as_echo_body='eval /usr/ucb/echo -n "$1$as_nl"'
+as_echo_n='/usr/ucb/echo -n'
+else
+as_echo_body='eval expr "X$1" : "X\\(.*\\)"'
+as_echo_n_body='eval
+arg=$1;
+case $arg in #(
+*"$as_nl"*)
+	expr "X$arg" : "X\\(.*\\)$as_nl";
+	arg=`expr "X$arg" : ".*$as_nl\\(.*\\)"`;;
+esac;
+expr "X$arg" : "X\\(.*\\)" | tr -d "$as_nl"
+'
+export as_echo_n_body
+as_echo_n='sh -c $as_echo_n_body as_echo'
+fi
+export as_echo_body
+as_echo='sh -c $as_echo_body as_echo'
+fi
+# The user is always right.
+if test "${PATH_SEPARATOR+set}" != set; then
+PATH_SEPARATOR=:
+(PATH='/bin;/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 && {
+(PATH='/bin:/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 ||
+PATH_SEPARATOR=';'
+}
+fi
+# IFS
+# We need space, tab and new line, in precisely that order.  Quoting is
+# there to prevent editors from complaining about space-tab.
+# (If _AS_PATH_WALK were called with IFS unset, it would disable word
+# splitting by setting IFS to empty value.)
+IFS=" ""	$as_nl"
+# Find who we are.  Look in the path if we contain no directory separator.
+as_myself=
+case $0 in #((
+*[\\/]* ) as_myself=$0 ;;
+*) as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+IFS=$as_save_IFS
+test -z "$as_dir" && as_dir=.
+test -r "$as_dir/$0" && as_myself=$as_dir/$0 && break
+done
+IFS=$as_save_IFS
+;;
+esac
+# We did not find ourselves, most probably we were run as `sh COMMAND'
+# in which case we are not to be found in the path.
+if test "x$as_myself" = x; then
+as_myself=$0
+fi
+if test ! -f "$as_myself"; then
+$as_echo "$as_myself: error: cannot find myself; rerun with an absolute file name" >&2
+exit 1
+fi
+# Unset variables that we do not need and which cause bugs (e.g. in
+# pre-3.0 UWIN ksh).  But do not cause bugs in bash 2.01; the "|| exit 1"
+# suppresses any "Segmentation fault" message there.  '((' could
+# trigger a bug in pdksh 5.2.14.
+for as_var in BASH_ENV ENV MAIL MAILPATH
+do eval test x\${$as_var+set} = xset \
+&& ( (unset $as_var) || exit 1) >/dev/null 2>&1 && unset $as_var || :
+done
+PS1='$ '
+PS2='> '
+PS4='+ '
+# NLS nuisances.
+LC_ALL=C
+export LC_ALL
+LANGUAGE=C
+export LANGUAGE
+# CDPATH.
+(unset CDPATH) >/dev/null 2>&1 && unset CDPATH
+if test "x$CONFIG_SHELL" = x; then
+as_bourne_compatible="if test -n \"\${ZSH_VERSION+set}\" && (emulate sh) >/dev/null 2>&1; then :
+emulate sh
+NULLCMD=:
+# Pre-4.2 versions of Zsh do word splitting on \${1+\"\$@\"}, which
+# is contrary to our usage.  Disable this feature.
+alias -g '\${1+\"\$@\"}'='\"\$@\"'
+setopt NO_GLOB_SUBST
+else
+case \`(set -o) 2>/dev/null\` in #(
+*posix*) :
+set -o posix ;; #(
+*) :
+;;
+esac
+fi
+"
+as_required="as_fn_return () { (exit \$1); }
+as_fn_success () { as_fn_return 0; }
+as_fn_failure () { as_fn_return 1; }
+as_fn_ret_success () { return 0; }
+as_fn_ret_failure () { return 1; }
+exitcode=0
+as_fn_success || { exitcode=1; echo as_fn_success failed.; }
+as_fn_failure && { exitcode=1; echo as_fn_failure succeeded.; }
+as_fn_ret_success || { exitcode=1; echo as_fn_ret_success failed.; }
+as_fn_ret_failure && { exitcode=1; echo as_fn_ret_failure succeeded.; }
+if ( set x; as_fn_ret_success y && test x = \"\$1\" ); then :
+else
+exitcode=1; echo positional parameters were not saved.
+fi
+test x\$exitcode = x0 || exit 1"
+as_suggested="  as_lineno_1=";as_suggested=$as_suggested$LINENO;as_suggested=$as_suggested" as_lineno_1a=\$LINENO
+as_lineno_2=";as_suggested=$as_suggested$LINENO;as_suggested=$as_suggested" as_lineno_2a=\$LINENO
+eval 'test \"x\$as_lineno_1'\$as_run'\" != \"x\$as_lineno_2'\$as_run'\" &&
+test \"x\`expr \$as_lineno_1'\$as_run' + 1\`\" = \"x\$as_lineno_2'\$as_run'\"' || exit 1"
+if (eval "$as_required") 2>/dev/null; then :
+as_have_required=yes
+else
+as_have_required=no
+fi
+if test x$as_have_required = xyes && (eval "$as_suggested") 2>/dev/null; then :
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+as_found=false
+for as_dir in /bin$PATH_SEPARATOR/usr/bin$PATH_SEPARATOR$PATH
+do
+IFS=$as_save_IFS
+test -z "$as_dir" && as_dir=.
+as_found=:
+case $as_dir in #(
+	 /*)
+	   for as_base in sh bash ksh sh5; do
+	     # Try only shells that exist, to save several forks.
+	     as_shell=$as_dir/$as_base
+	     if { test -f "$as_shell" || test -f "$as_shell.exe"; } &&
+		    { $as_echo "$as_bourne_compatible""$as_required" | as_run=a "$as_shell"; } 2>/dev/null; then :
+CONFIG_SHELL=$as_shell as_have_required=yes
+		   if { $as_echo "$as_bourne_compatible""$as_suggested" | as_run=a "$as_shell"; } 2>/dev/null; then :
+break 2
+fi
+fi
+	   done;;
+esac
+as_found=false
+done
+$as_found || { if { test -f "$SHELL" || test -f "$SHELL.exe"; } &&
+	      { $as_echo "$as_bourne_compatible""$as_required" | as_run=a "$SHELL"; } 2>/dev/null; then :
+CONFIG_SHELL=$SHELL as_have_required=yes
+fi; }
+IFS=$as_save_IFS
+if test "x$CONFIG_SHELL" != x; then :
+# We cannot yet assume a decent shell, so we have to provide a
+	# neutralization value for shells without unset; and this also
+	# works around shells that cannot unset nonexistent variables.
+	# Preserve -v and -x to the replacement shell.
+	BASH_ENV=/dev/null
+	ENV=/dev/null
+	(unset BASH_ENV) >/dev/null 2>&1 && unset BASH_ENV ENV
+	export CONFIG_SHELL
+	case $- in # ((((
+	  *v*x* | *x*v* ) as_opts=-vx ;;
+	  *v* ) as_opts=-v ;;
+	  *x* ) as_opts=-x ;;
+	  * ) as_opts= ;;
+	esac
+	exec "$CONFIG_SHELL" $as_opts "$as_myself" ${1+"$@"}
+fi
+if test x$as_have_required = xno; then :
+$as_echo "$0: This script requires a shell more modern than all"
+$as_echo "$0: the shells that I found on your system."
+if test x${ZSH_VERSION+set} = xset ; then
+$as_echo "$0: In particular, zsh $ZSH_VERSION has bugs and should"
+$as_echo "$0: be upgraded to zsh 4.3.4 or later."
+else
+$as_echo "$0: Please tell bug-autoconf@gnu.org and
+$0: samtools-help@lists.sourceforge.net about your system,
+$0: including any error possibly output before this
+$0: message. Then install a modern shell, or manually run
+$0: the script under such a shell if you do have one."
+fi
+exit 1
+fi
+fi
+fi
+SHELL=${CONFIG_SHELL-/bin/sh}
+export SHELL
+# Unset more variables known to interfere with behavior of common tools.
+CLICOLOR_FORCE= GREP_OPTIONS=
+unset CLICOLOR_FORCE GREP_OPTIONS
+## --------------------- ##
+## M4sh Shell Functions. ##
+## --------------------- ##
+# as_fn_unset VAR
+# ---------------
+# Portably unset VAR.
+as_fn_unset ()
+{
+{ eval $1=; unset $1;}
+}
+as_unset=as_fn_unset
+# as_fn_set_status STATUS
+# -----------------------
+# Set $? to STATUS, without forking.
+as_fn_set_status ()
+{
+return $1
+} # as_fn_set_status
+# as_fn_exit STATUS
+# -----------------
+# Exit the shell with STATUS, even in a "trap 0" or "set -e" context.
+as_fn_exit ()
+{
+set +e
+as_fn_set_status $1
+exit $1
+} # as_fn_exit
+# as_fn_mkdir_p
+# -------------
+# Create "$as_dir" as a directory, including parents if necessary.
+as_fn_mkdir_p ()
+{
+case $as_dir in #(
+-*) as_dir=./$as_dir;;
+esac
+test -d "$as_dir" || eval $as_mkdir_p || {
+as_dirs=
+while :; do
+case $as_dir in #(
+*\'*) as_qdir=`$as_echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #'(
+*) as_qdir=$as_dir;;
+esac
+as_dirs="'$as_qdir' $as_dirs"
+as_dir=`$as_dirname -- "$as_dir" ||
+$as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
+	 X"$as_dir" : 'X\(//\)[^/]' \| \
+	 X"$as_dir" : 'X\(//\)$' \| \
+	 X"$as_dir" : 'X\(/\)' \| . 2>/dev/null ||
+$as_echo X"$as_dir" |
+sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
+	    s//\1/
+	    q
+	  }
+	  /^X\(\/\/\)[^/].*/{
+	    s//\1/
+	    q
+	  }
+	  /^X\(\/\/\)$/{
+	    s//\1/
+	    q
+	  }
+	  /^X\(\/\).*/{
+	    s//\1/
+	    q
+	  }
+	  s/.*/./; q'`
+test -d "$as_dir" && break
+done
+test -z "$as_dirs" || eval "mkdir $as_dirs"
+} || test -d "$as_dir" || as_fn_error $? "cannot create directory $as_dir"
+} # as_fn_mkdir_p
+# as_fn_append VAR VALUE
+# ----------------------
+# Append the text in VALUE to the end of the definition contained in VAR. Take
+# advantage of any shell optimizations that allow amortized linear growth over
+# repeated appends, instead of the typical quadratic growth present in naive
+# implementations.
+if (eval "as_var=1; as_var+=2; test x\$as_var = x12") 2>/dev/null; then :
+eval 'as_fn_append ()
+{
+eval $1+=\$2
+}'
+else
+as_fn_append ()
+{
+eval $1=\$$1\$2
+}
+fi # as_fn_append
+# as_fn_arith ARG...
+# ------------------
+# Perform arithmetic evaluation on the ARGs, and store the result in the
+# global $as_val. Take advantage of shells that can avoid forks. The arguments
+# must be portable across $(()) and expr.
+if (eval "test \$(( 1 + 1 )) = 2") 2>/dev/null; then :
+eval 'as_fn_arith ()
+{
+as_val=$(( $* ))
+}'
+else
+as_fn_arith ()
+{
+as_val=`expr "$@" || test $? -eq 1`
+}
+fi # as_fn_arith
+# as_fn_error STATUS ERROR [LINENO LOG_FD]
+# ----------------------------------------
+# Output "`basename $0`: error: ERROR" to stderr. If LINENO and LOG_FD are
+# provided, also output the error to LOG_FD, referencing LINENO. Then exit the
+# script with STATUS, using 1 if that was 0.
+as_fn_error ()
+{
+as_status=$1; test $as_status -eq 0 && as_status=1
+if test "$4"; then
+as_lineno=${as_lineno-"$3"} as_lineno_stack=as_lineno_stack=$as_lineno_stack
+$as_echo "$as_me:${as_lineno-$LINENO}: error: $2" >&$4
+fi
+$as_echo "$as_me: error: $2" >&2
+as_fn_exit $as_status
+} # as_fn_error
+if expr a : '\(a\)' >/dev/null 2>&1 &&
+test "X`expr 00001 : '.*\(...\)'`" = X001; then
+as_expr=expr
+else
+as_expr=false
+fi
+if (basename -- /) >/dev/null 2>&1 && test "X`basename -- / 2>&1`" = "X/"; then
+as_basename=basename
+else
+as_basename=false
+fi
+if (as_dir=`dirname -- /` && test "X$as_dir" = X/) >/dev/null 2>&1; then
+as_dirname=dirname
+else
+as_dirname=false
+fi
+as_me=`$as_basename -- "$0" ||
+$as_expr X/"$0" : '.*/\([^/][^/]*\)/*$' \| \
+	 X"$0" : 'X\(//\)$' \| \
+	 X"$0" : 'X\(/\)' \| . 2>/dev/null ||
+$as_echo X/"$0" |
+sed '/^.*\/\([^/][^/]*\)\/*$/{
+	    s//\1/
+	    q
+	  }
+	  /^X\/\(\/\/\)$/{
+	    s//\1/
+	    q
+	  }
+	  /^X\/\(\/\).*/{
+	    s//\1/
+	    q
+	  }
+	  s/.*/./; q'`
+# Avoid depending upon Character Ranges.
+as_cr_letters='abcdefghijklmnopqrstuvwxyz'
+as_cr_LETTERS='ABCDEFGHIJKLMNOPQRSTUVWXYZ'
+as_cr_Letters=$as_cr_letters$as_cr_LETTERS
+as_cr_digits='0123456789'
+as_cr_alnum=$as_cr_Letters$as_cr_digits
+as_lineno_1=$LINENO as_lineno_1a=$LINENO
+as_lineno_2=$LINENO as_lineno_2a=$LINENO
+eval 'test "x$as_lineno_1'$as_run'" != "x$as_lineno_2'$as_run'" &&
+test "x`expr $as_lineno_1'$as_run' + 1`" = "x$as_lineno_2'$as_run'"' || {
+# Blame Lee E. McMahon (1931-1989) for sed's syntax.  :-)
+sed -n '
+p
+/[$]LINENO/=
+' <$as_myself |
+sed '
+s/[$]LINENO.*/&-/
+t lineno
+b
+:lineno
+N
+:loop
+s/[$]LINENO\([^'$as_cr_alnum'_].*\n\)\(.*\)/\2\1\2/
+t loop
+s/-\n.*//
+' >$as_me.lineno &&
+chmod +x "$as_me.lineno" ||
+{ $as_echo "$as_me: error: cannot create $as_me.lineno; rerun with a POSIX shell" >&2; as_fn_exit 1; }
+# Don't try to exec as it changes $[0], causing all sort of problems
+# (the dirname of $[0] is not the place where we might find the
+# original and so on.  Autoconf is especially sensitive to this).
+. "./$as_me.lineno"
+# Exit status is that of the last command.
+exit
+}
+ECHO_C= ECHO_N= ECHO_T=
+case `echo -n x` in #(((((
+-n*)
+case `echo 'xy\c'` in
+*c*) ECHO_T='	';;	# ECHO_T is single tab character.
+xy)  ECHO_C='\c';;
+*)   echo `echo ksh88 bug on AIX 6.1` > /dev/null
+ECHO_T='	';;
+esac;;
+*)
+ECHO_N='-n';;
+esac
+rm -f conf$$ conf$$.exe conf$$.file
+if test -d conf$$.dir; then
+rm -f conf$$.dir/conf$$.file
+else
+rm -f conf$$.dir
+mkdir conf$$.dir 2>/dev/null
+fi
+if (echo >conf$$.file) 2>/dev/null; then
+if ln -s conf$$.file conf$$ 2>/dev/null; then
+as_ln_s='ln -s'
+# ... but there are two gotchas:
+# 1) On MSYS, both `ln -s file dir' and `ln file dir' fail.
+# 2) DJGPP < 2.04 has no symlinks; `ln -s' creates a wrapper executable.
+# In both cases, we have to default to `cp -p'.
+ln -s conf$$.file conf$$.dir 2>/dev/null && test ! -f conf$$.exe ||
+as_ln_s='cp -p'
+elif ln conf$$.file conf$$ 2>/dev/null; then
+as_ln_s=ln
+else
+as_ln_s='cp -p'
+fi
+else
+as_ln_s='cp -p'
+fi
+rm -f conf$$ conf$$.exe conf$$.dir/conf$$.file conf$$.file
+rmdir conf$$.dir 2>/dev/null
+if mkdir -p . 2>/dev/null; then
+as_mkdir_p='mkdir -p "$as_dir"'
+else
+test -d ./-p && rmdir ./-p
+as_mkdir_p=false
+fi
+if test -x / >/dev/null 2>&1; then
+as_test_x='test -x'
+else
+if ls -dL / >/dev/null 2>&1; then
+as_ls_L_option=L
+else
+as_ls_L_option=
+fi
+as_test_x='
+eval sh -c '\''
+if test -d "$1"; then
+	test -d "$1/.";
+else
+	case $1 in #(
+	-*)set "./$1";;
+	esac;
+	case `ls -ld'$as_ls_L_option' "$1" 2>/dev/null` in #((
+	???[sx]*):;;*)false;;esac;fi
+'\'' sh
+'
+fi
+as_executable_p=$as_test_x
+# Sed expression to map a string onto a valid CPP name.
+as_tr_cpp="eval sed 'y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g'"
+# Sed expression to map a string onto a valid variable name.
+as_tr_sh="eval sed 'y%*+%pp%;s%[^_$as_cr_alnum]%_%g'"
+test -n "$DJDIR" || exec 7<&0 </dev/null
+exec 6>&1
+# Name of the host.
+# hostname on some systems (SVR3.2, old GNU/Linux) returns a bogus exit status,
+# so uname gets run too.
+ac_hostname=`(hostname || uname -n) 2>/dev/null | sed 1q`
+#
+# Initializations.
+#
+ac_default_prefix=/usr/local
+ac_clean_files=
+ac_config_libobj_dir=.
+LIBOBJS=
+cross_compiling=no
+subdirs=
+MFLAGS=
+MAKEFLAGS=
+# Identity of this package.
+PACKAGE_NAME='HTSlib'
+PACKAGE_TARNAME='htslib'
+PACKAGE_VERSION='1.2.1'
+PACKAGE_STRING='HTSlib 1.2.1'
+PACKAGE_BUGREPORT='samtools-help@lists.sourceforge.net'
+PACKAGE_URL='http://www.htslib.org/'
+ac_unique_file="hts.c"
+ac_subst_vars='LTLIBOBJS
+LIBOBJS
+define_IRODS_HOME
+irods
+RANLIB
+OBJEXT
+EXEEXT
+ac_ct_CC
+CPPFLAGS
+LDFLAGS
+CFLAGS
+CC
+target_alias
+host_alias
+build_alias
+LIBS
+ECHO_T
+ECHO_N
+ECHO_C
+DEFS
+mandir
+localedir
+libdir
+psdir
+pdfdir
+dvidir
+htmldir
+infodir
+docdir
+oldincludedir
+includedir
+localstatedir
+sharedstatedir
+sysconfdir
+datadir
+datarootdir
+libexecdir
+sbindir
+bindir
+program_transform_name
+prefix
+exec_prefix
+PACKAGE_URL
+PACKAGE_BUGREPORT
+PACKAGE_STRING
+PACKAGE_VERSION
+PACKAGE_TARNAME
+PACKAGE_NAME
+PATH_SEPARATOR
+SHELL'
+ac_subst_files=''
+ac_user_opts='
+enable_option_checking
+with_irods
+'
+ac_precious_vars='build_alias
+host_alias
+target_alias
+CC
+CFLAGS
+LDFLAGS
+LIBS
+CPPFLAGS'
+# Initialize some variables set by options.
+ac_init_help=
+ac_init_version=false
+ac_unrecognized_opts=
+ac_unrecognized_sep=
+# The variables have the same names as the options, with
+# dashes changed to underlines.
+cache_file=/dev/null
+exec_prefix=NONE
+no_create=
+no_recursion=
+prefix=NONE
+program_prefix=NONE
+program_suffix=NONE
+program_transform_name=s,x,x,
+silent=
+site=
+srcdir=
+verbose=
+x_includes=NONE
+x_libraries=NONE
+# Installation directory options.
+# These are left unexpanded so users can "make install exec_prefix=/foo"
+# and all the variables that are supposed to be based on exec_prefix
+# by default will actually change.
+# Use braces instead of parens because sh, perl, etc. also accept them.
+# (The list follows the same order as the GNU Coding Standards.)
+bindir='${exec_prefix}/bin'
+sbindir='${exec_prefix}/sbin'
+libexecdir='${exec_prefix}/libexec'
+datarootdir='${prefix}/share'
+datadir='${datarootdir}'
+sysconfdir='${prefix}/etc'
+sharedstatedir='${prefix}/com'
+localstatedir='${prefix}/var'
+includedir='${prefix}/include'
+oldincludedir='/usr/include'
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+-htmldir=* | --htmldir=* | --htmldi=* | --htmld=* | --html=* | --htm=* \
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+localedir=$ac_optarg ;;
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+-localstatedir=* | --localstatedir=* | --localstatedi=* | --localstated=* \
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+-nfp | --nfp | --nf)
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+-no-recursion | --no-recursion | --no-recursio | --no-recursi \
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+| --oldin=* | --oldi=* | --old=* | --ol=* | --o=*)
+oldincludedir=$ac_optarg ;;
+-prefix | --prefix | --prefi | --pref | --pre | --pr | --p)
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+-program-prefix | --program-prefix | --program-prefi | --program-pref \
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+-program-prefix=* | --program-prefix=* | --program-prefi=* \
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+program_prefix=$ac_optarg ;;
+-program-suffix | --program-suffix | --program-suffi | --program-suff \
+| --program-suf | --program-su | --program-s)
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+-program-suffix=* | --program-suffix=* | --program-suffi=* \
+| --program-suff=* | --program-suf=* | --program-su=* | --program-s=*)
+program_suffix=$ac_optarg ;;
+-program-transform-name | --program-transform-name \
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+| --program-transform-n | --program-transform- \
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+| --program-trans | --program-tran \
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+-program-transform-name=* | --program-transform-name=* \
+| --program-transform-nam=* | --program-transform-na=* \
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+| --program-transform=* | --program-transfor=* \
+| --program-transfo=* | --program-transf=* \
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+-psdir=* | --psdir=* | --psdi=* | --psd=* | --ps=*)
+psdir=$ac_optarg ;;
+-q | -quiet | --quiet | --quie | --qui | --qu | --q \
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+-sbindir | --sbindir | --sbindi | --sbind | --sbin | --sbi | --sb)
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+-sharedstatedir | --sharedstatedir | --sharedstatedi \
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+| --sharedst | --shareds | --shared | --share | --shar \
+| --sha | --sh)
+ac_prev=sharedstatedir ;;
+-sharedstatedir=* | --sharedstatedir=* | --sharedstatedi=* \
+| --sharedstated=* | --sharedstate=* | --sharedstat=* | --sharedsta=* \
+| --sharedst=* | --shareds=* | --shared=* | --share=* | --shar=* \
+| --sha=* | --sh=*)
+sharedstatedir=$ac_optarg ;;
+-site | --site | --sit)
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+-site=* | --site=* | --sit=*)
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+-sysconfdir | --sysconfdir | --sysconfdi | --sysconfd | --sysconf \
+| --syscon | --sysco | --sysc | --sys | --sy)
+ac_prev=sysconfdir ;;
+-sysconfdir=* | --sysconfdir=* | --sysconfdi=* | --sysconfd=* | --sysconf=* \
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+sysconfdir=$ac_optarg ;;
+-target | --target | --targe | --targ | --tar | --ta | --t)
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+-target=* | --target=* | --targe=* | --targ=* | --tar=* | --ta=* | --t=*)
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+-version | --version | --versio | --versi | --vers | -V)
+ac_init_version=: ;;
+-with-* | --with-*)
+ac_useropt=`expr "x$ac_option" : 'x-*with-\([^=]*\)'`
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+expr "x$ac_useropt" : ".*[^-+._$as_cr_alnum]" >/dev/null &&
+as_fn_error $? "invalid package name: $ac_useropt"
+ac_useropt_orig=$ac_useropt
+ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
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+"with_$ac_useropt"
+"*) ;;
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+	 ac_unrecognized_sep=', ';;
+esac
+eval with_$ac_useropt=\$ac_optarg ;;
+-without-* | --without-*)
+ac_useropt=`expr "x$ac_option" : 'x-*without-\(.*\)'`
+# Reject names that are not valid shell variable names.
+expr "x$ac_useropt" : ".*[^-+._$as_cr_alnum]" >/dev/null &&
+as_fn_error $? "invalid package name: $ac_useropt"
+ac_useropt_orig=$ac_useropt
+ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
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+"with_$ac_useropt"
+"*) ;;
+*) ac_unrecognized_opts="$ac_unrecognized_opts$ac_unrecognized_sep--without-$ac_useropt_orig"
+	 ac_unrecognized_sep=', ';;
+esac
+eval with_$ac_useropt=no ;;
+--x)
+# Obsolete; use --with-x.
+with_x=yes ;;
+-x-includes | --x-includes | --x-include | --x-includ | --x-inclu \
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+ac_prev=x_includes ;;
+-x-includes=* | --x-includes=* | --x-include=* | --x-includ=* | --x-inclu=* \
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+x_includes=$ac_optarg ;;
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+-x-libraries=* | --x-libraries=* | --x-librarie=* | --x-librari=* \
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+x_libraries=$ac_optarg ;;
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+export $ac_envvar ;;
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+# FIXME: should be removed in autoconf 3.0.
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+$as_echo "$as_me: WARNING: invalid host type: $ac_option" >&2
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+# Check all directory arguments for consistency.
+for ac_var in	exec_prefix prefix bindir sbindir libexecdir datarootdir \
+		datadir sysconfdir sharedstatedir localstatedir includedir \
+		oldincludedir docdir infodir htmldir dvidir pdfdir psdir \
+		libdir localedir mandir
+do
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+# Remove trailing slashes.
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+[\\/$]* | ?:[\\/]* )  continue;;
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+# used to hold the argument of --host etc.
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+$as_echo "$as_me: WARNING: if you wanted to set the --build type, don't use --host.
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+test "$silent" = yes && exec 6>/dev/null
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+# Find the source files, if location was not specified.
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+ac_srcdir_defaulted=yes
+# Try the directory containing this script, then the parent directory.
+ac_confdir=`$as_dirname -- "$as_myself" ||
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+	 X"$as_myself" : 'X\(//\)[^/]' \| \
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+$as_echo X"$as_myself" |
+sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
+	    s//\1/
+	    q
+	  }
+	  /^X\(\/\/\)[^/].*/{
+	    s//\1/
+	    q
+	  }
+	  /^X\(\/\/\)$/{
+	    s//\1/
+	    q
+	  }
+	  /^X\(\/\).*/{
+	    s//\1/
+	    q
+	  }
+	  s/.*/./; q'`
+srcdir=$ac_confdir
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+srcdir=..
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+else
+ac_srcdir_defaulted=no
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+srcdir=.
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+# Remove unnecessary trailing slashes from srcdir.
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+# mess up M-x gdb in Emacs.
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+esac
+for ac_var in $ac_precious_vars; do
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+eval ac_cv_env_${ac_var}_value=\$${ac_var}
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+#
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+if test "$ac_init_help" = "long"; then
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+# This message is too long to be a string in the A/UX 3.1 sh.
+cat <<_ACEOF
+\`configure' configures HTSlib 1.2.1 to adapt to many kinds of systems.
+Usage: $0 [OPTION]... [VAR=VALUE]...
+To assign environment variables (e.g., CC, CFLAGS...), specify them as
+VAR=VALUE.  See below for descriptions of some of the useful variables.
+Defaults for the options are specified in brackets.
+Configuration:
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+--help=short        display options specific to this package
+--help=recursive    display the short help of all the included packages
+-V, --version           display version information and exit
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+-C, --config-cache      alias for \`--cache-file=config.cache'
+-n, --no-create         do not create output files
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+For better control, use the options below.
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+--sbindir=DIR           system admin executables [EPREFIX/sbin]
+--libexecdir=DIR        program executables [EPREFIX/libexec]
+--sysconfdir=DIR        read-only single-machine data [PREFIX/etc]
+--sharedstatedir=DIR    modifiable architecture-independent data [PREFIX/com]
+--localstatedir=DIR     modifiable single-machine data [PREFIX/var]
+--libdir=DIR            object code libraries [EPREFIX/lib]
+--includedir=DIR        C header files [PREFIX/include]
+--oldincludedir=DIR     C header files for non-gcc [/usr/include]
+--datarootdir=DIR       read-only arch.-independent data root [PREFIX/share]
+--datadir=DIR           read-only architecture-independent data [DATAROOTDIR]
+--infodir=DIR           info documentation [DATAROOTDIR/info]
+--localedir=DIR         locale-dependent data [DATAROOTDIR/locale]
+--mandir=DIR            man documentation [DATAROOTDIR/man]
+--docdir=DIR            documentation root [DATAROOTDIR/doc/htslib]
+--htmldir=DIR           html documentation [DOCDIR]
+--dvidir=DIR            dvi documentation [DOCDIR]
+--pdfdir=DIR            pdf documentation [DOCDIR]
+--psdir=DIR             ps documentation [DOCDIR]
+_ACEOF
+cat <<\_ACEOF
+_ACEOF
+fi
+if test -n "$ac_init_help"; then
+case $ac_init_help in
+short | recursive ) echo "Configuration of HTSlib 1.2.1:";;
+esac
+cat <<\_ACEOF
+Optional Packages:
+--with-PACKAGE[=ARG]    use PACKAGE [ARG=yes]
+--without-PACKAGE       do not use PACKAGE (same as --with-PACKAGE=no)
+--with-irods[=DIR]      use RodsAPIs library (in DIR) to support iRODS URLs
+Some influential environment variables:
+CC          C compiler command
+CFLAGS      C compiler flags
+LDFLAGS     linker flags, e.g. -L<lib dir> if you have libraries in a
+nonstandard directory <lib dir>
+LIBS        libraries to pass to the linker, e.g. -l<library>
+CPPFLAGS    (Objective) C/C++ preprocessor flags, e.g. -I<include dir> if
+you have headers in a nonstandard directory <include dir>
+Use these variables to override the choices made by `configure' or to help
+it to find libraries and programs with nonstandard names/locations.
+Report bugs to <samtools-help@lists.sourceforge.net>.
+HTSlib home page: <http://www.htslib.org/>.
+_ACEOF
+ac_status=$?
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+ac_dir_suffix=/`$as_echo "$ac_dir" | sed 's|^\.[\\/]||'`
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+ac_abs_top_builddir=$ac_pwd
+ac_abs_builddir=$ac_pwd$ac_dir_suffix
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+ac_srcdir=.
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+ac_abs_srcdir=$ac_abs_top_srcdir$ac_dir_suffix
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+$as_echo "$as_me: WARNING: no configuration information is in $ac_dir" >&2
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+test -n "$ac_init_help" && exit $ac_status
+if $ac_init_version; then
+cat <<\_ACEOF
+HTSlib configure 1.2.1
+generated by GNU Autoconf 2.68
+Copyright (C) 2010 Free Software Foundation, Inc.
+This configure script is free software; the Free Software Foundation
+gives unlimited permission to copy, distribute and modify it.
+Portions copyright (C) 2015 Genome Research Ltd.
+This configure script is free software: you are free to change and
+redistribute it.  There is NO WARRANTY, to the extent permitted by law.
+_ACEOF
+exit
+fi
+## ------------------------ ##
+## Autoconf initialization. ##
+## ------------------------ ##
+# ac_fn_c_try_compile LINENO
+# --------------------------
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+if { { ac_try="$ac_compile"
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+*\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
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+$as_echo "$ac_try_echo"; } >&5
+(eval "$ac_compile") 2>conftest.err
+ac_status=$?
+if test -s conftest.err; then
+grep -v '^ *+' conftest.err >conftest.er1
+cat conftest.er1 >&5
+mv -f conftest.er1 conftest.err
+fi
+$as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
+test $ac_status = 0; } && {
+	 test -z "$ac_c_werror_flag" ||
+	 test ! -s conftest.err
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+ac_retval=0
+else
+$as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+	ac_retval=1
+fi
+eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno
+as_fn_set_status $ac_retval
+} # ac_fn_c_try_compile
+# ac_fn_c_check_header_compile LINENO HEADER VAR INCLUDES
+# -------------------------------------------------------
+# Tests whether HEADER exists and can be compiled using the include files in
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+ac_fn_c_check_header_compile ()
+{
+as_lineno=${as_lineno-"$1"} as_lineno_stack=as_lineno_stack=$as_lineno_stack
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+$as_echo_n "(cached) " >&6
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+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h.  */
+$4
+#include <$2>
+_ACEOF
+if ac_fn_c_try_compile "$LINENO"; then :
+eval "$3=yes"
+else
+eval "$3=no"
+fi
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
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+eval ac_res=\$$3
+	       { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno
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+# ac_fn_c_try_link LINENO
+# -----------------------
+# Try to link conftest.$ac_ext, and return whether this succeeded.
+ac_fn_c_try_link ()
+{
+as_lineno=${as_lineno-"$1"} as_lineno_stack=as_lineno_stack=$as_lineno_stack
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { { ac_try="$ac_link"
+case "(($ac_try" in
+*\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
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+fi
+$as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
+test $ac_status = 0; } && {
+	 test -z "$ac_c_werror_flag" ||
+	 test ! -s conftest.err
+} && test -s conftest$ac_exeext && {
+	 test "$cross_compiling" = yes ||
+	 $as_test_x conftest$ac_exeext
+}; then :
+ac_retval=0
+else
+$as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+	ac_retval=1
+fi
+# Delete the IPA/IPO (Inter Procedural Analysis/Optimization) information
+# created by the PGI compiler (conftest_ipa8_conftest.oo), as it would
+# interfere with the next link command; also delete a directory that is
+# left behind by Apple's compiler.  We do this before executing the actions.
+rm -rf conftest.dSYM conftest_ipa8_conftest.oo
+eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno
+as_fn_set_status $ac_retval
+} # ac_fn_c_try_link
+cat >config.log <<_ACEOF
+This file contains any messages produced by compilers while
+running configure, to aid debugging if configure makes a mistake.
+It was created by HTSlib $as_me 1.2.1, which was
+generated by GNU Autoconf 2.68.  Invocation command line was
+$ $0 $@
+_ACEOF
+exec 5>>config.log
+{
+cat <<_ASUNAME
+## --------- ##
+## Platform. ##
+## --------- ##
+hostname = `(hostname || uname -n) 2>/dev/null | sed 1q`
+uname -m = `(uname -m) 2>/dev/null || echo unknown`
+uname -r = `(uname -r) 2>/dev/null || echo unknown`
+uname -s = `(uname -s) 2>/dev/null || echo unknown`
+uname -v = `(uname -v) 2>/dev/null || echo unknown`
+/usr/bin/uname -p = `(/usr/bin/uname -p) 2>/dev/null || echo unknown`
+/bin/uname -X     = `(/bin/uname -X) 2>/dev/null     || echo unknown`
+/bin/arch              = `(/bin/arch) 2>/dev/null              || echo unknown`
+/usr/bin/arch -k       = `(/usr/bin/arch -k) 2>/dev/null       || echo unknown`
+/usr/convex/getsysinfo = `(/usr/convex/getsysinfo) 2>/dev/null || echo unknown`
+/usr/bin/hostinfo      = `(/usr/bin/hostinfo) 2>/dev/null      || echo unknown`
+/bin/machine           = `(/bin/machine) 2>/dev/null           || echo unknown`
+/usr/bin/oslevel       = `(/usr/bin/oslevel) 2>/dev/null       || echo unknown`
+/bin/universe          = `(/bin/universe) 2>/dev/null          || echo unknown`
+_ASUNAME
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+IFS=$as_save_IFS
+test -z "$as_dir" && as_dir=.
+$as_echo "PATH: $as_dir"
+done
+IFS=$as_save_IFS
+} >&5
+cat >&5 <<_ACEOF
+## ----------- ##
+## Core tests. ##
+## ----------- ##
+_ACEOF
+# Keep a trace of the command line.
+# Strip out --no-create and --no-recursion so they do not pile up.
+# Strip out --silent because we don't want to record it for future runs.
+# Also quote any args containing shell meta-characters.
+# Make two passes to allow for proper duplicate-argument suppression.
+ac_configure_args=
+ac_configure_args0=
+ac_configure_args1=
+ac_must_keep_next=false
+for ac_pass in 1 2
+do
+for ac_arg
+do
+case $ac_arg in
+-no-create | --no-c* | -n | -no-recursion | --no-r*) continue ;;
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+continue ;;
+*\'*)
+ac_arg=`$as_echo "$ac_arg" | sed "s/'/'\\\\\\\\''/g"` ;;
+esac
+case $ac_pass in
+1) as_fn_append ac_configure_args0 " '$ac_arg'" ;;
+2)
+as_fn_append ac_configure_args1 " '$ac_arg'"
+if test $ac_must_keep_next = true; then
+	ac_must_keep_next=false # Got value, back to normal.
+else
+	case $ac_arg in
+	  *=* | --config-cache | -C | -disable-* | --disable-* \
+	  | -enable-* | --enable-* | -gas | --g* | -nfp | --nf* \
+	  | -q | -quiet | --q* | -silent | --sil* | -v | -verb* \
+	  | -with-* | --with-* | -without-* | --without-* | --x)
+	    case "$ac_configure_args0 " in
+	      "$ac_configure_args1"*" '$ac_arg' "* ) continue ;;
+	    esac
+	    ;;
+	  -* ) ac_must_keep_next=true ;;
+	esac
+fi
+as_fn_append ac_configure_args " '$ac_arg'"
+;;
+esac
+done
+done
+{ ac_configure_args0=; unset ac_configure_args0;}
+{ ac_configure_args1=; unset ac_configure_args1;}
+# When interrupted or exit'd, cleanup temporary files, and complete
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+# WARNING: Use '\'' to represent an apostrophe within the trap.
+# WARNING: Do not start the trap code with a newline, due to a FreeBSD 4.0 bug.
+trap 'exit_status=$?
+# Save into config.log some information that might help in debugging.
+{
+echo
+$as_echo "## ---------------- ##
+## Cache variables. ##
+## ---------------- ##"
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+# The following way of writing the cache mishandles newlines in values,
+(
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+case $ac_var in #(
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+$as_echo "$as_me: WARNING: cache variable $ac_var contains a newline" >&2;} ;;
+esac
+case $ac_var in #(
+_ | IFS | as_nl) ;; #(
+BASH_ARGV | BASH_SOURCE) eval $ac_var= ;; #(
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+esac
+done
+(set) 2>&1 |
+case $as_nl`(ac_space='\'' '\''; set) 2>&1` in #(
+*${as_nl}ac_space=\ *)
+sed -n \
+	"s/'\''/'\''\\\\'\'''\''/g;
+	  s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1='\''\\2'\''/p"
+;; #(
+*)
+sed -n "/^[_$as_cr_alnum]*_cv_[_$as_cr_alnum]*=/p"
+;;
+esac |
+sort
+)
+echo
+$as_echo "## ----------------- ##
+## Output variables. ##
+## ----------------- ##"
+echo
+for ac_var in $ac_subst_vars
+do
+eval ac_val=\$$ac_var
+case $ac_val in
+*\'\''*) ac_val=`$as_echo "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;;
+esac
+$as_echo "$ac_var='\''$ac_val'\''"
+done | sort
+echo
+if test -n "$ac_subst_files"; then
+$as_echo "## ------------------- ##
+## File substitutions. ##
+## ------------------- ##"
+echo
+for ac_var in $ac_subst_files
+do
+	eval ac_val=\$$ac_var
+	case $ac_val in
+	*\'\''*) ac_val=`$as_echo "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;;
+	esac
+	$as_echo "$ac_var='\''$ac_val'\''"
+done | sort
+echo
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+if test -s confdefs.h; then
+$as_echo "## ----------- ##
+## confdefs.h. ##
+## ----------- ##"
+echo
+cat confdefs.h
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+test "$ac_signal" != 0 &&
+$as_echo "$as_me: caught signal $ac_signal"
+$as_echo "$as_me: exit $exit_status"
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+rm -f core *.core core.conftest.* &&
+rm -f -r conftest* confdefs* conf$$* $ac_clean_files &&
+exit $exit_status
+' 0
+for ac_signal in 1 2 13 15; do
+trap 'ac_signal='$ac_signal'; as_fn_exit 1' $ac_signal
+done
+ac_signal=0
+# confdefs.h avoids OS command line length limits that DEFS can exceed.
+rm -f -r conftest* confdefs.h
+$as_echo "/* confdefs.h */" > confdefs.h
+# Predefined preprocessor variables.
+cat >>confdefs.h <<_ACEOF
+#define PACKAGE_NAME "$PACKAGE_NAME"
+_ACEOF
+cat >>confdefs.h <<_ACEOF
+#define PACKAGE_TARNAME "$PACKAGE_TARNAME"
+_ACEOF
+cat >>confdefs.h <<_ACEOF
+#define PACKAGE_VERSION "$PACKAGE_VERSION"
+_ACEOF
+cat >>confdefs.h <<_ACEOF
+#define PACKAGE_STRING "$PACKAGE_STRING"
+_ACEOF
+cat >>confdefs.h <<_ACEOF
+#define PACKAGE_BUGREPORT "$PACKAGE_BUGREPORT"
+_ACEOF
+cat >>confdefs.h <<_ACEOF
+#define PACKAGE_URL "$PACKAGE_URL"
+_ACEOF
+# Let the site file select an alternate cache file if it wants to.
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+ac_site_file1=NONE
+ac_site_file2=NONE
+if test -n "$CONFIG_SITE"; then
+# We do not want a PATH search for config.site.
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+-*)  ac_site_file1=./$CONFIG_SITE;;
+*/*) ac_site_file1=$CONFIG_SITE;;
+*)   ac_site_file1=./$CONFIG_SITE;;
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+ac_site_file1=$prefix/share/config.site
+ac_site_file2=$prefix/etc/config.site
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+ac_site_file1=$ac_default_prefix/share/config.site
+ac_site_file2=$ac_default_prefix/etc/config.site
+fi
+for ac_site_file in "$ac_site_file1" "$ac_site_file2"
+do
+test "x$ac_site_file" = xNONE && continue
+if test /dev/null != "$ac_site_file" && test -r "$ac_site_file"; then
+{ $as_echo "$as_me:${as_lineno-$LINENO}: loading site script $ac_site_file" >&5
+$as_echo "$as_me: loading site script $ac_site_file" >&6;}
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+. "$ac_site_file" \
+|| { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
+$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
+as_fn_error $? "failed to load site script $ac_site_file
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+fi
+done
+if test -r "$cache_file"; then
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+if test /dev/null != "$cache_file" && test -f "$cache_file"; then
+{ $as_echo "$as_me:${as_lineno-$LINENO}: loading cache $cache_file" >&5
+$as_echo "$as_me: loading cache $cache_file" >&6;}
+case $cache_file in
+[\\/]* | ?:[\\/]* ) . "$cache_file";;
+*)                      . "./$cache_file";;
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+else
+{ $as_echo "$as_me:${as_lineno-$LINENO}: creating cache $cache_file" >&5
+$as_echo "$as_me: creating cache $cache_file" >&6;}
+>$cache_file
+fi
+# Check that the precious variables saved in the cache have kept the same
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+ac_cache_corrupted=false
+for ac_var in $ac_precious_vars; do
+eval ac_old_set=\$ac_cv_env_${ac_var}_set
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+eval ac_old_val=\$ac_cv_env_${ac_var}_value
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+$as_echo "$as_me: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&2;}
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+$as_echo "$as_me: error: \`$ac_var' was not set in the previous run" >&2;}
+ac_cache_corrupted=: ;;
+,);;
+*)
+if test "x$ac_old_val" != "x$ac_new_val"; then
+	# differences in whitespace do not lead to failure.
+	ac_old_val_w=`echo x $ac_old_val`
+	ac_new_val_w=`echo x $ac_new_val`
+	if test "$ac_old_val_w" != "$ac_new_val_w"; then
+	  { $as_echo "$as_me:${as_lineno-$LINENO}: error: \`$ac_var' has changed since the previous run:" >&5
+$as_echo "$as_me: error: \`$ac_var' has changed since the previous run:" >&2;}
+	  ac_cache_corrupted=:
+	else
+	  { $as_echo "$as_me:${as_lineno-$LINENO}: warning: ignoring whitespace changes in \`$ac_var' since the previous run:" >&5
+$as_echo "$as_me: warning: ignoring whitespace changes in \`$ac_var' since the previous run:" >&2;}
+	  eval $ac_var=\$ac_old_val
+	fi
+	{ $as_echo "$as_me:${as_lineno-$LINENO}:   former value:  \`$ac_old_val'" >&5
+$as_echo "$as_me:   former value:  \`$ac_old_val'" >&2;}
+	{ $as_echo "$as_me:${as_lineno-$LINENO}:   current value: \`$ac_new_val'" >&5
+$as_echo "$as_me:   current value: \`$ac_new_val'" >&2;}
+fi;;
+esac
+# Pass precious variables to config.status.
+if test "$ac_new_set" = set; then
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+*\'*) ac_arg=$ac_var=`$as_echo "$ac_new_val" | sed "s/'/'\\\\\\\\''/g"` ;;
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+*) as_fn_append ac_configure_args " '$ac_arg'" ;;
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+fi
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+if $ac_cache_corrupted; then
+{ $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
+$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
+{ $as_echo "$as_me:${as_lineno-$LINENO}: error: changes in the environment can compromise the build" >&5
+$as_echo "$as_me: error: changes in the environment can compromise the build" >&2;}
+as_fn_error $? "run \`make distclean' and/or \`rm $cache_file' and start over" "$LINENO" 5
+fi
+## -------------------- ##
+## Main body of script. ##
+## -------------------- ##
+ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
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+ac_compiler_gnu=$ac_cv_c_compiler_gnu
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+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
+if test -n "$ac_tool_prefix"; then
+# Extract the first word of "${ac_tool_prefix}gcc", so it can be a program name with args.
+set dummy ${ac_tool_prefix}gcc; ac_word=$2
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if ${ac_cv_prog_CC+:} false; then :
+$as_echo_n "(cached) " >&6
+else
+if test -n "$CC"; then
+ac_cv_prog_CC="$CC" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+IFS=$as_save_IFS
+test -z "$as_dir" && as_dir=.
+for ac_exec_ext in '' $ac_executable_extensions; do
+if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ac_cv_prog_CC="${ac_tool_prefix}gcc"
+$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
+break 2
+fi
+done
+done
+IFS=$as_save_IFS
+fi
+fi
+CC=$ac_cv_prog_CC
+if test -n "$CC"; then
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $CC" >&5
+$as_echo "$CC" >&6; }
+else
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
+$as_echo "no" >&6; }
+fi
+fi
+if test -z "$ac_cv_prog_CC"; then
+ac_ct_CC=$CC
+# Extract the first word of "gcc", so it can be a program name with args.
+set dummy gcc; ac_word=$2
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if ${ac_cv_prog_ac_ct_CC+:} false; then :
+$as_echo_n "(cached) " >&6
+else
+if test -n "$ac_ct_CC"; then
+ac_cv_prog_ac_ct_CC="$ac_ct_CC" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+IFS=$as_save_IFS
+test -z "$as_dir" && as_dir=.
+for ac_exec_ext in '' $ac_executable_extensions; do
+if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ac_cv_prog_ac_ct_CC="gcc"
+$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
+break 2
+fi
+done
+done
+IFS=$as_save_IFS
+fi
+fi
+ac_ct_CC=$ac_cv_prog_ac_ct_CC
+if test -n "$ac_ct_CC"; then
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_CC" >&5
+$as_echo "$ac_ct_CC" >&6; }
+else
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
+$as_echo "no" >&6; }
+fi
+if test "x$ac_ct_CC" = x; then
+CC=""
+else
+case $cross_compiling:$ac_tool_warned in
+yes:)
+{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5
+$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;}
+ac_tool_warned=yes ;;
+esac
+CC=$ac_ct_CC
+fi
+else
+CC="$ac_cv_prog_CC"
+fi
+if test -z "$CC"; then
+if test -n "$ac_tool_prefix"; then
+# Extract the first word of "${ac_tool_prefix}cc", so it can be a program name with args.
+set dummy ${ac_tool_prefix}cc; ac_word=$2
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if ${ac_cv_prog_CC+:} false; then :
+$as_echo_n "(cached) " >&6
+else
+if test -n "$CC"; then
+ac_cv_prog_CC="$CC" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+IFS=$as_save_IFS
+test -z "$as_dir" && as_dir=.
+for ac_exec_ext in '' $ac_executable_extensions; do
+if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ac_cv_prog_CC="${ac_tool_prefix}cc"
+$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
+break 2
+fi
+done
+done
+IFS=$as_save_IFS
+fi
+fi
+CC=$ac_cv_prog_CC
+if test -n "$CC"; then
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $CC" >&5
+$as_echo "$CC" >&6; }
+else
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
+$as_echo "no" >&6; }
+fi
+fi
+fi
+if test -z "$CC"; then
+# Extract the first word of "cc", so it can be a program name with args.
+set dummy cc; ac_word=$2
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if ${ac_cv_prog_CC+:} false; then :
+$as_echo_n "(cached) " >&6
+else
+if test -n "$CC"; then
+ac_cv_prog_CC="$CC" # Let the user override the test.
+else
+ac_prog_rejected=no
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+IFS=$as_save_IFS
+test -z "$as_dir" && as_dir=.
+for ac_exec_ext in '' $ac_executable_extensions; do
+if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+if test "$as_dir/$ac_word$ac_exec_ext" = "/usr/ucb/cc"; then
+ac_prog_rejected=yes
+continue
+fi
+ac_cv_prog_CC="cc"
+$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
+break 2
+fi
+done
+done
+IFS=$as_save_IFS
+if test $ac_prog_rejected = yes; then
+# We found a bogon in the path, so make sure we never use it.
+set dummy $ac_cv_prog_CC
+shift
+if test $# != 0; then
+# We chose a different compiler from the bogus one.
+# However, it has the same basename, so the bogon will be chosen
+# first if we set CC to just the basename; use the full file name.
+shift
+ac_cv_prog_CC="$as_dir/$ac_word${1+' '}$@"
+fi
+fi
+fi
+fi
+CC=$ac_cv_prog_CC
+if test -n "$CC"; then
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $CC" >&5
+$as_echo "$CC" >&6; }
+else
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
+$as_echo "no" >&6; }
+fi
+fi
+if test -z "$CC"; then
+if test -n "$ac_tool_prefix"; then
+for ac_prog in cl.exe
+do
+# Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args.
+set dummy $ac_tool_prefix$ac_prog; ac_word=$2
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if ${ac_cv_prog_CC+:} false; then :
+$as_echo_n "(cached) " >&6
+else
+if test -n "$CC"; then
+ac_cv_prog_CC="$CC" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+IFS=$as_save_IFS
+test -z "$as_dir" && as_dir=.
+for ac_exec_ext in '' $ac_executable_extensions; do
+if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ac_cv_prog_CC="$ac_tool_prefix$ac_prog"
+$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
+break 2
+fi
+done
+done
+IFS=$as_save_IFS
+fi
+fi
+CC=$ac_cv_prog_CC
+if test -n "$CC"; then
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $CC" >&5
+$as_echo "$CC" >&6; }
+else
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
+$as_echo "no" >&6; }
+fi
+test -n "$CC" && break
+done
+fi
+if test -z "$CC"; then
+ac_ct_CC=$CC
+for ac_prog in cl.exe
+do
+# Extract the first word of "$ac_prog", so it can be a program name with args.
+set dummy $ac_prog; ac_word=$2
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if ${ac_cv_prog_ac_ct_CC+:} false; then :
+$as_echo_n "(cached) " >&6
+else
+if test -n "$ac_ct_CC"; then
+ac_cv_prog_ac_ct_CC="$ac_ct_CC" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+IFS=$as_save_IFS
+test -z "$as_dir" && as_dir=.
+for ac_exec_ext in '' $ac_executable_extensions; do
+if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ac_cv_prog_ac_ct_CC="$ac_prog"
+$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
+break 2
+fi
+done
+done
+IFS=$as_save_IFS
+fi
+fi
+ac_ct_CC=$ac_cv_prog_ac_ct_CC
+if test -n "$ac_ct_CC"; then
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_CC" >&5
+$as_echo "$ac_ct_CC" >&6; }
+else
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
+$as_echo "no" >&6; }
+fi
+test -n "$ac_ct_CC" && break
+done
+if test "x$ac_ct_CC" = x; then
+CC=""
+else
+case $cross_compiling:$ac_tool_warned in
+yes:)
+{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5
+$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;}
+ac_tool_warned=yes ;;
+esac
+CC=$ac_ct_CC
+fi
+fi
+fi
+test -z "$CC" && { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
+$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
+as_fn_error $? "no acceptable C compiler found in \$PATH
+See \`config.log' for more details" "$LINENO" 5; }
+# Provide some information about the compiler.
+$as_echo "$as_me:${as_lineno-$LINENO}: checking for C compiler version" >&5
+set X $ac_compile
+ac_compiler=$2
+for ac_option in --version -v -V -qversion; do
+{ { ac_try="$ac_compiler $ac_option >&5"
+case "(($ac_try" in
+*\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+*) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""
+$as_echo "$ac_try_echo"; } >&5
+(eval "$ac_compiler $ac_option >&5") 2>conftest.err
+ac_status=$?
+if test -s conftest.err; then
+sed '10a\
+... rest of stderr output deleted ...
+10q' conftest.err >conftest.er1
+cat conftest.er1 >&5
+fi
+rm -f conftest.er1 conftest.err
+$as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
+test $ac_status = 0; }
+done
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h.  */
+int
+main ()
+{
+;
+return 0;
+}
+_ACEOF
+ac_clean_files_save=$ac_clean_files
+ac_clean_files="$ac_clean_files a.out a.out.dSYM a.exe b.out"
+# Try to create an executable without -o first, disregard a.out.
+# It will help us diagnose broken compilers, and finding out an intuition
+# of exeext.
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether the C compiler works" >&5
+$as_echo_n "checking whether the C compiler works... " >&6; }
+ac_link_default=`$as_echo "$ac_link" | sed 's/ -o *conftest[^ ]*//'`
+# The possible output files:
+ac_files="a.out conftest.exe conftest a.exe a_out.exe b.out conftest.*"
+ac_rmfiles=
+for ac_file in $ac_files
+do
+case $ac_file in
+*.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM | *.o | *.obj ) ;;
+* ) ac_rmfiles="$ac_rmfiles $ac_file";;
+esac
+done
+rm -f $ac_rmfiles
+if { { ac_try="$ac_link_default"
+case "(($ac_try" in
+*\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+*) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""
+$as_echo "$ac_try_echo"; } >&5
+(eval "$ac_link_default") 2>&5
+ac_status=$?
+$as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
+test $ac_status = 0; }; then :
+# Autoconf-2.13 could set the ac_cv_exeext variable to `no'.
+# So ignore a value of `no', otherwise this would lead to `EXEEXT = no'
+# in a Makefile.  We should not override ac_cv_exeext if it was cached,
+# so that the user can short-circuit this test for compilers unknown to
+# Autoconf.
+for ac_file in $ac_files ''
+do
+test -f "$ac_file" || continue
+case $ac_file in
+*.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM | *.o | *.obj )
+	;;
+[ab].out )
+	# We found the default executable, but exeext='' is most
+	# certainly right.
+	break;;
+*.* )
+	if test "${ac_cv_exeext+set}" = set && test "$ac_cv_exeext" != no;
+	then :; else
+	   ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
+	fi
+	# We set ac_cv_exeext here because the later test for it is not
+	# safe: cross compilers may not add the suffix if given an `-o'
+	# argument, so we may need to know it at that point already.
+	# Even if this section looks crufty: it has the advantage of
+	# actually working.
+	break;;
+* )
+	break;;
+esac
+done
+test "$ac_cv_exeext" = no && ac_cv_exeext=
+else
+ac_file=''
+fi
+if test -z "$ac_file"; then :
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
+$as_echo "no" >&6; }
+$as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+{ { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
+$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
+as_fn_error 77 "C compiler cannot create executables
+See \`config.log' for more details" "$LINENO" 5; }
+else
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5
+$as_echo "yes" >&6; }
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for C compiler default output file name" >&5
+$as_echo_n "checking for C compiler default output file name... " >&6; }
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_file" >&5
+$as_echo "$ac_file" >&6; }
+ac_exeext=$ac_cv_exeext
+rm -f -r a.out a.out.dSYM a.exe conftest$ac_cv_exeext b.out
+ac_clean_files=$ac_clean_files_save
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for suffix of executables" >&5
+$as_echo_n "checking for suffix of executables... " >&6; }
+if { { ac_try="$ac_link"
+case "(($ac_try" in
+*\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+*) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""
+$as_echo "$ac_try_echo"; } >&5
+(eval "$ac_link") 2>&5
+ac_status=$?
+$as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
+test $ac_status = 0; }; then :
+# If both `conftest.exe' and `conftest' are `present' (well, observable)
+# catch `conftest.exe'.  For instance with Cygwin, `ls conftest' will
+# work properly (i.e., refer to `conftest.exe'), while it won't with
+# `rm'.
+for ac_file in conftest.exe conftest conftest.*; do
+test -f "$ac_file" || continue
+case $ac_file in
+*.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM | *.o | *.obj ) ;;
+*.* ) ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
+	  break;;
+* ) break;;
+esac
+done
+else
+{ { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
+$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
+as_fn_error $? "cannot compute suffix of executables: cannot compile and link
+See \`config.log' for more details" "$LINENO" 5; }
+fi
+rm -f conftest conftest$ac_cv_exeext
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_exeext" >&5
+$as_echo "$ac_cv_exeext" >&6; }
+rm -f conftest.$ac_ext
+EXEEXT=$ac_cv_exeext
+ac_exeext=$EXEEXT
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h.  */
+#include <stdio.h>
+int
+main ()
+{
+FILE *f = fopen ("conftest.out", "w");
+return ferror (f) || fclose (f) != 0;
+;
+return 0;
+}
+_ACEOF
+ac_clean_files="$ac_clean_files conftest.out"
+# Check that the compiler produces executables we can run.  If not, either
+# the compiler is broken, or we cross compile.
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether we are cross compiling" >&5
+$as_echo_n "checking whether we are cross compiling... " >&6; }
+if test "$cross_compiling" != yes; then
+{ { ac_try="$ac_link"
+case "(($ac_try" in
+*\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+*) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""
+$as_echo "$ac_try_echo"; } >&5
+(eval "$ac_link") 2>&5
+ac_status=$?
+$as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
+test $ac_status = 0; }
+if { ac_try='./conftest$ac_cv_exeext'
+{ { case "(($ac_try" in
+*\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+*) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""
+$as_echo "$ac_try_echo"; } >&5
+(eval "$ac_try") 2>&5
+ac_status=$?
+$as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
+test $ac_status = 0; }; }; then
+cross_compiling=no
+else
+if test "$cross_compiling" = maybe; then
+	cross_compiling=yes
+else
+	{ { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
+$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
+as_fn_error $? "cannot run C compiled programs.
+If you meant to cross compile, use \`--host'.
+See \`config.log' for more details" "$LINENO" 5; }
+fi
+fi
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $cross_compiling" >&5
+$as_echo "$cross_compiling" >&6; }
+rm -f conftest.$ac_ext conftest$ac_cv_exeext conftest.out
+ac_clean_files=$ac_clean_files_save
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for suffix of object files" >&5
+$as_echo_n "checking for suffix of object files... " >&6; }
+if ${ac_cv_objext+:} false; then :
+$as_echo_n "(cached) " >&6
+else
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h.  */
+int
+main ()
+{
+;
+return 0;
+}
+_ACEOF
+rm -f conftest.o conftest.obj
+if { { ac_try="$ac_compile"
+case "(($ac_try" in
+*\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+*) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""
+$as_echo "$ac_try_echo"; } >&5
+(eval "$ac_compile") 2>&5
+ac_status=$?
+$as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
+test $ac_status = 0; }; then :
+for ac_file in conftest.o conftest.obj conftest.*; do
+test -f "$ac_file" || continue;
+case $ac_file in
+*.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM ) ;;
+*) ac_cv_objext=`expr "$ac_file" : '.*\.\(.*\)'`
+break;;
+esac
+done
+else
+$as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+{ { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
+$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
+as_fn_error $? "cannot compute suffix of object files: cannot compile
+See \`config.log' for more details" "$LINENO" 5; }
+fi
+rm -f conftest.$ac_cv_objext conftest.$ac_ext
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_objext" >&5
+$as_echo "$ac_cv_objext" >&6; }
+OBJEXT=$ac_cv_objext
+ac_objext=$OBJEXT
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether we are using the GNU C compiler" >&5
+$as_echo_n "checking whether we are using the GNU C compiler... " >&6; }
+if ${ac_cv_c_compiler_gnu+:} false; then :
+$as_echo_n "(cached) " >&6
+else
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h.  */
+int
+main ()
+{
+#ifndef __GNUC__
+choke me
+#endif
+;
+return 0;
+}
+_ACEOF
+if ac_fn_c_try_compile "$LINENO"; then :
+ac_compiler_gnu=yes
+else
+ac_compiler_gnu=no
+fi
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ac_cv_c_compiler_gnu=$ac_compiler_gnu
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_c_compiler_gnu" >&5
+$as_echo "$ac_cv_c_compiler_gnu" >&6; }
+if test $ac_compiler_gnu = yes; then
+GCC=yes
+else
+GCC=
+fi
+ac_test_CFLAGS=${CFLAGS+set}
+ac_save_CFLAGS=$CFLAGS
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether $CC accepts -g" >&5
+$as_echo_n "checking whether $CC accepts -g... " >&6; }
+if ${ac_cv_prog_cc_g+:} false; then :
+$as_echo_n "(cached) " >&6
+else
+ac_save_c_werror_flag=$ac_c_werror_flag
+ac_c_werror_flag=yes
+ac_cv_prog_cc_g=no
+CFLAGS="-g"
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h.  */
+int
+main ()
+{
+;
+return 0;
+}
+_ACEOF
+if ac_fn_c_try_compile "$LINENO"; then :
+ac_cv_prog_cc_g=yes
+else
+CFLAGS=""
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h.  */
+int
+main ()
+{
+;
+return 0;
+}
+_ACEOF
+if ac_fn_c_try_compile "$LINENO"; then :
+else
+ac_c_werror_flag=$ac_save_c_werror_flag
+	 CFLAGS="-g"
+	 cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h.  */
+int
+main ()
+{
+;
+return 0;
+}
+_ACEOF
+if ac_fn_c_try_compile "$LINENO"; then :
+ac_cv_prog_cc_g=yes
+fi
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+fi
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+fi
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ac_c_werror_flag=$ac_save_c_werror_flag
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_prog_cc_g" >&5
+$as_echo "$ac_cv_prog_cc_g" >&6; }
+if test "$ac_test_CFLAGS" = set; then
+CFLAGS=$ac_save_CFLAGS
+elif test $ac_cv_prog_cc_g = yes; then
+if test "$GCC" = yes; then
+CFLAGS="-g -O2"
+else
+CFLAGS="-g"
+fi
+else
+if test "$GCC" = yes; then
+CFLAGS="-O2"
+else
+CFLAGS=
+fi
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $CC option to accept ISO C89" >&5
+$as_echo_n "checking for $CC option to accept ISO C89... " >&6; }
+if ${ac_cv_prog_cc_c89+:} false; then :
+$as_echo_n "(cached) " >&6
+else
+ac_cv_prog_cc_c89=no
+ac_save_CC=$CC
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h.  */
+#include <stdarg.h>
+#include <stdio.h>
+#include <sys/types.h>
+#include <sys/stat.h>
+/* Most of the following tests are stolen from RCS 5.7's src/conf.sh.  */
+struct buf { int x; };
+FILE * (*rcsopen) (struct buf *, struct stat *, int);
+static char *e (p, i)
+char **p;
+int i;
+{
+return p[i];
+}
+static char *f (char * (*g) (char **, int), char **p, ...)
+{
+char *s;
+va_list v;
+va_start (v,p);
+s = g (p, va_arg (v,int));
+va_end (v);
+return s;
+}
+/* OSF 4.0 Compaq cc is some sort of almost-ANSI by default.  It has
+function prototypes and stuff, but not '\xHH' hex character constants.
+These don't provoke an error unfortunately, instead are silently treated
+as 'x'.  The following induces an error, until -std is added to get
+proper ANSI mode.  Curiously '\x00'!='x' always comes out true, for an
+array size at least.  It's necessary to write '\x00'==0 to get something
+that's true only with -std.  */
+int osf4_cc_array ['\x00' == 0 ? 1 : -1];
+/* IBM C 6 for AIX is almost-ANSI by default, but it replaces macro parameters
+inside strings and character constants.  */
+#define FOO(x) 'x'
+int xlc6_cc_array[FOO(a) == 'x' ? 1 : -1];
+int test (int i, double x);
+struct s1 {int (*f) (int a);};
+struct s2 {int (*f) (double a);};
+int pairnames (int, char **, FILE *(*)(struct buf *, struct stat *, int), int, int);
+int argc;
+char **argv;
+int
+main ()
+{
+return f (e, argv, 0) != argv[0]  ||  f (e, argv, 1) != argv[1];
+;
+return 0;
+}
+_ACEOF
+for ac_arg in '' -qlanglvl=extc89 -qlanglvl=ansi -std \
+	-Ae "-Aa -D_HPUX_SOURCE" "-Xc -D__EXTENSIONS__"
+do
+CC="$ac_save_CC $ac_arg"
+if ac_fn_c_try_compile "$LINENO"; then :
+ac_cv_prog_cc_c89=$ac_arg
+fi
+rm -f core conftest.err conftest.$ac_objext
+test "x$ac_cv_prog_cc_c89" != "xno" && break
+done
+rm -f conftest.$ac_ext
+CC=$ac_save_CC
+fi
+# AC_CACHE_VAL
+case "x$ac_cv_prog_cc_c89" in
+x)
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: none needed" >&5
+$as_echo "none needed" >&6; } ;;
+xno)
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: unsupported" >&5
+$as_echo "unsupported" >&6; } ;;
+*)
+CC="$CC $ac_cv_prog_cc_c89"
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_prog_cc_c89" >&5
+$as_echo "$ac_cv_prog_cc_c89" >&6; } ;;
+esac
+if test "x$ac_cv_prog_cc_c89" != xno; then :
+fi
+ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
+if test -n "$ac_tool_prefix"; then
+# Extract the first word of "${ac_tool_prefix}ranlib", so it can be a program name with args.
+set dummy ${ac_tool_prefix}ranlib; ac_word=$2
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if ${ac_cv_prog_RANLIB+:} false; then :
+$as_echo_n "(cached) " >&6
+else
+if test -n "$RANLIB"; then
+ac_cv_prog_RANLIB="$RANLIB" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+IFS=$as_save_IFS
+test -z "$as_dir" && as_dir=.
+for ac_exec_ext in '' $ac_executable_extensions; do
+if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ac_cv_prog_RANLIB="${ac_tool_prefix}ranlib"
+$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
+break 2
+fi
+done
+done
+IFS=$as_save_IFS
+fi
+fi
+RANLIB=$ac_cv_prog_RANLIB
+if test -n "$RANLIB"; then
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $RANLIB" >&5
+$as_echo "$RANLIB" >&6; }
+else
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
+$as_echo "no" >&6; }
+fi
+fi
+if test -z "$ac_cv_prog_RANLIB"; then
+ac_ct_RANLIB=$RANLIB
+# Extract the first word of "ranlib", so it can be a program name with args.
+set dummy ranlib; ac_word=$2
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if ${ac_cv_prog_ac_ct_RANLIB+:} false; then :
+$as_echo_n "(cached) " >&6
+else
+if test -n "$ac_ct_RANLIB"; then
+ac_cv_prog_ac_ct_RANLIB="$ac_ct_RANLIB" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+IFS=$as_save_IFS
+test -z "$as_dir" && as_dir=.
+for ac_exec_ext in '' $ac_executable_extensions; do
+if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ac_cv_prog_ac_ct_RANLIB="ranlib"
+$as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
+break 2
+fi
+done
+done
+IFS=$as_save_IFS
+fi
+fi
+ac_ct_RANLIB=$ac_cv_prog_ac_ct_RANLIB
+if test -n "$ac_ct_RANLIB"; then
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_RANLIB" >&5
+$as_echo "$ac_ct_RANLIB" >&6; }
+else
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
+$as_echo "no" >&6; }
+fi
+if test "x$ac_ct_RANLIB" = x; then
+RANLIB=":"
+else
+case $cross_compiling:$ac_tool_warned in
+yes:)
+{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5
+$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;}
+ac_tool_warned=yes ;;
+esac
+RANLIB=$ac_ct_RANLIB
+fi
+else
+RANLIB="$ac_cv_prog_RANLIB"
+fi
+# Check whether --with-irods was given.
+if test "${with_irods+set}" = set; then :
+withval=$with_irods; case $withval in
+no)  irods=disabled ;;
+yes) irods=enabled ;;
+*)   irods=enabled; IRODS_HOME=$withval ;;
+esac
+else
+irods=disabled
+fi
+save_LIBS=$LIBS
+zlib_devel=ok
+ac_fn_c_check_header_compile "$LINENO" "zlib.h" "ac_cv_header_zlib_h" ";
+"
+if test "x$ac_cv_header_zlib_h" = xyes; then :
+else
+zlib_devel=missing
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for inflate in -lz" >&5
+$as_echo_n "checking for inflate in -lz... " >&6; }
+if ${ac_cv_lib_z_inflate+:} false; then :
+$as_echo_n "(cached) " >&6
+else
+ac_check_lib_save_LIBS=$LIBS
+LIBS="-lz  $LIBS"
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h.  */
+/* Override any GCC internal prototype to avoid an error.
+Use char because int might match the return type of a GCC
+builtin and then its argument prototype would still apply.  */
+#ifdef __cplusplus
+extern "C"
+#endif
+char inflate ();
+int
+main ()
+{
+return inflate ();
+;
+return 0;
+}
+_ACEOF
+if ac_fn_c_try_link "$LINENO"; then :
+ac_cv_lib_z_inflate=yes
+else
+ac_cv_lib_z_inflate=no
+fi
+rm -f core conftest.err conftest.$ac_objext \
+conftest$ac_exeext conftest.$ac_ext
+LIBS=$ac_check_lib_save_LIBS
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_z_inflate" >&5
+$as_echo "$ac_cv_lib_z_inflate" >&6; }
+if test "x$ac_cv_lib_z_inflate" = xyes; then :
+cat >>confdefs.h <<_ACEOF
+#define HAVE_LIBZ 1
+_ACEOF
+LIBS="-lz $LIBS"
+else
+zlib_devel=missing
+fi
+LIBS=$save_LIBS
+if test $zlib_devel != ok; then
+as_fn_error $? "zlib development files not found
+HTSlib uses compression routines from the zlib library <http://zlib.net>.
+Building HTSlib requires zlib development files to be installed on the build
+machine; you may need to ensure a package such as zlib1g-dev (on Debian or
+Ubuntu Linux) or zlib-devel (on RPM-based Linux distributions) is installed.
+FAILED.  This error must be resolved in order to build HTSlib successfully." "$LINENO" 5
+fi
+if test $irods = enabled; then
+# TODO Also test whether we require libgssapi_krb5 and AC_CHECK_LIB it
+save_LDFLAGS=$LDFLAGS
+LDFLAGS="$LDFLAGS -L$IRODS_HOME/lib/core/obj"
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for getRodsEnvFileName in -lRodsAPIs" >&5
+$as_echo_n "checking for getRodsEnvFileName in -lRodsAPIs... " >&6; }
+if ${ac_cv_lib_RodsAPIs_getRodsEnvFileName+:} false; then :
+$as_echo_n "(cached) " >&6
+else
+ac_check_lib_save_LIBS=$LIBS
+LIBS="-lRodsAPIs -lgssapi_krb5 -lpthread $LIBS"
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h.  */
+/* Override any GCC internal prototype to avoid an error.
+Use char because int might match the return type of a GCC
+builtin and then its argument prototype would still apply.  */
+#ifdef __cplusplus
+extern "C"
+#endif
+char getRodsEnvFileName ();
+int
+main ()
+{
+return getRodsEnvFileName ();
+;
+return 0;
+}
+_ACEOF
+if ac_fn_c_try_link "$LINENO"; then :
+ac_cv_lib_RodsAPIs_getRodsEnvFileName=yes
+else
+ac_cv_lib_RodsAPIs_getRodsEnvFileName=no
+fi
+rm -f core conftest.err conftest.$ac_objext \
+conftest$ac_exeext conftest.$ac_ext
+LIBS=$ac_check_lib_save_LIBS
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_RodsAPIs_getRodsEnvFileName" >&5
+$as_echo "$ac_cv_lib_RodsAPIs_getRodsEnvFileName" >&6; }
+if test "x$ac_cv_lib_RodsAPIs_getRodsEnvFileName" = xyes; then :
+case $with_irods in
+yes) define_IRODS_HOME='# Uses $(IRODS_HOME) from the environment' ;;
+*)   define_IRODS_HOME="IRODS_HOME = $with_irods" ;;
+esac
+else
+as_fn_error $? "iRODS development files not found
+Support for iRODS URLs requires the libRodsAPI client library and headers.
+Configure with --with-irods=DIR (or just --with-irods if \$IRODS_HOME has
+been exported with a suitable value), where DIR is the base of an iRODS tree
+such that the library is present as DIR/lib/core/obj/libRodsAPI.* and headers
+are present under DIR/lib/api/include and so on." "$LINENO" 5
+fi
+LDFLAGS=$save_LDFLAGS
+else
+define_IRODS_HOME='IRODS_HOME ?= /disabled'
+fi
+ac_config_files="$ac_config_files config.mk"
+cat >confcache <<\_ACEOF
+# This file is a shell script that caches the results of configure
+# tests run on this system so they can be shared between configure
+# scripts and configure runs, see configure's option --config-cache.
+# It is not useful on other systems.  If it contains results you don't
+# want to keep, you may remove or edit it.
+#
+# config.status only pays attention to the cache file if you give it
+# the --recheck option to rerun configure.
+#
+# `ac_cv_env_foo' variables (set or unset) will be overridden when
+# loading this file, other *unset* `ac_cv_foo' will be assigned the
+# following values.
+_ACEOF
+# The following way of writing the cache mishandles newlines in values,
+# but we know of no workaround that is simple, portable, and efficient.
+# So, we kill variables containing newlines.
+# Ultrix sh set writes to stderr and can't be redirected directly,
+# and sets the high bit in the cache file unless we assign to the vars.
+(
+for ac_var in `(set) 2>&1 | sed -n 's/^\([a-zA-Z_][a-zA-Z0-9_]*\)=.*/\1/p'`; do
+eval ac_val=\$$ac_var
+case $ac_val in #(
+*${as_nl}*)
+case $ac_var in #(
+*_cv_*) { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: cache variable $ac_var contains a newline" >&5
+$as_echo "$as_me: WARNING: cache variable $ac_var contains a newline" >&2;} ;;
+esac
+case $ac_var in #(
+_ | IFS | as_nl) ;; #(
+BASH_ARGV | BASH_SOURCE) eval $ac_var= ;; #(
+*) { eval $ac_var=; unset $ac_var;} ;;
+esac ;;
+esac
+done
+(set) 2>&1 |
+case $as_nl`(ac_space=' '; set) 2>&1` in #(
+*${as_nl}ac_space=\ *)
+# `set' does not quote correctly, so add quotes: double-quote
+# substitution turns \\\\ into \\, and sed turns \\ into \.
+sed -n \
+	"s/'/'\\\\''/g;
+	  s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1='\\2'/p"
+;; #(
+*)
+# `set' quotes correctly as required by POSIX, so do not add quotes.
+sed -n "/^[_$as_cr_alnum]*_cv_[_$as_cr_alnum]*=/p"
+;;
+esac |
+sort
+) |
+sed '
+/^ac_cv_env_/b end
+t clear
+:clear
+s/^\([^=]*\)=\(.*[{}].*\)$/test "${\1+set}" = set || &/
+t end
+s/^\([^=]*\)=\(.*\)$/\1=${\1=\2}/
+:end' >>confcache
+if diff "$cache_file" confcache >/dev/null 2>&1; then :; else
+if test -w "$cache_file"; then
+if test "x$cache_file" != "x/dev/null"; then
+{ $as_echo "$as_me:${as_lineno-$LINENO}: updating cache $cache_file" >&5
+$as_echo "$as_me: updating cache $cache_file" >&6;}
+if test ! -f "$cache_file" || test -h "$cache_file"; then
+	cat confcache >"$cache_file"
+else
+case $cache_file in #(
+*/* | ?:*)
+	  mv -f confcache "$cache_file"$$ &&
+	  mv -f "$cache_file"$$ "$cache_file" ;; #(
+*)
+	  mv -f confcache "$cache_file" ;;
+	esac
+fi
+fi
+else
+{ $as_echo "$as_me:${as_lineno-$LINENO}: not updating unwritable cache $cache_file" >&5
+$as_echo "$as_me: not updating unwritable cache $cache_file" >&6;}
+fi
+fi
+rm -f confcache
+test "x$prefix" = xNONE && prefix=$ac_default_prefix
+# Let make expand exec_prefix.
+test "x$exec_prefix" = xNONE && exec_prefix='${prefix}'
+# Transform confdefs.h into DEFS.
+# Protect against shell expansion while executing Makefile rules.
+# Protect against Makefile macro expansion.
+#
+# If the first sed substitution is executed (which looks for macros that
+# take arguments), then branch to the quote section.  Otherwise,
+# look for a macro that doesn't take arguments.
+ac_script='
+:mline
+/\\$/{
+N
+s,\\\n,,
+b mline
+}
+t clear
+:clear
+s/^[	 ]*#[	 ]*define[	 ][	 ]*\([^	 (][^	 (]*([^)]*)\)[	 ]*\(.*\)/-D\1=\2/g
+t quote
+s/^[	 ]*#[	 ]*define[	 ][	 ]*\([^	 ][^	 ]*\)[	 ]*\(.*\)/-D\1=\2/g
+t quote
+b any
+:quote
+s/[	 `~#$^&*(){}\\|;'\''"<>?]/\\&/g
+s/\[/\\&/g
+s/\]/\\&/g
+s/\$/$$/g
+H
+:any
+${
+	g
+	s/^\n//
+	s/\n/ /g
+	p
+}
+'
+DEFS=`sed -n "$ac_script" confdefs.h`
+ac_libobjs=
+ac_ltlibobjs=
+U=
+for ac_i in : $LIBOBJS; do test "x$ac_i" = x: && continue
+# 1. Remove the extension, and $U if already installed.
+ac_script='s/\$U\././;s/\.o$//;s/\.obj$//'
+ac_i=`$as_echo "$ac_i" | sed "$ac_script"`
+# 2. Prepend LIBOBJDIR.  When used with automake>=1.10 LIBOBJDIR
+#    will be set to the directory where LIBOBJS objects are built.
+as_fn_append ac_libobjs " \${LIBOBJDIR}$ac_i\$U.$ac_objext"
+as_fn_append ac_ltlibobjs " \${LIBOBJDIR}$ac_i"'$U.lo'
+done
+LIBOBJS=$ac_libobjs
+LTLIBOBJS=$ac_ltlibobjs
+: "${CONFIG_STATUS=./config.status}"
+ac_write_fail=0
+ac_clean_files_save=$ac_clean_files
+ac_clean_files="$ac_clean_files $CONFIG_STATUS"
+{ $as_echo "$as_me:${as_lineno-$LINENO}: creating $CONFIG_STATUS" >&5
+$as_echo "$as_me: creating $CONFIG_STATUS" >&6;}
+as_write_fail=0
+cat >$CONFIG_STATUS <<_ASEOF || as_write_fail=1
+#! $SHELL
+# Generated by $as_me.
+# Run this file to recreate the current configuration.
+# Compiler output produced by configure, useful for debugging
+# configure, is in config.log if it exists.
+debug=false
+ac_cs_recheck=false
+ac_cs_silent=false
+SHELL=\${CONFIG_SHELL-$SHELL}
+export SHELL
+_ASEOF
+cat >>$CONFIG_STATUS <<\_ASEOF || as_write_fail=1
+## -------------------- ##
+## M4sh Initialization. ##
+## -------------------- ##
+# Be more Bourne compatible
+DUALCASE=1; export DUALCASE # for MKS sh
+if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then :
+emulate sh
+NULLCMD=:
+# Pre-4.2 versions of Zsh do word splitting on ${1+"$@"}, which
+# is contrary to our usage.  Disable this feature.
+alias -g '${1+"$@"}'='"$@"'
+setopt NO_GLOB_SUBST
+else
+case `(set -o) 2>/dev/null` in #(
+*posix*) :
+set -o posix ;; #(
+*) :
+;;
+esac
+fi
+as_nl='
+'
+export as_nl
+# Printing a long string crashes Solaris 7 /usr/bin/printf.
+as_echo='\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\'
+as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo
+as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo$as_echo
+# Prefer a ksh shell builtin over an external printf program on Solaris,
+# but without wasting forks for bash or zsh.
+if test -z "$BASH_VERSION$ZSH_VERSION" \
+&& (test "X`print -r -- $as_echo`" = "X$as_echo") 2>/dev/null; then
+as_echo='print -r --'
+as_echo_n='print -rn --'
+elif (test "X`printf %s $as_echo`" = "X$as_echo") 2>/dev/null; then
+as_echo='printf %s\n'
+as_echo_n='printf %s'
+else
+if test "X`(/usr/ucb/echo -n -n $as_echo) 2>/dev/null`" = "X-n $as_echo"; then
+as_echo_body='eval /usr/ucb/echo -n "$1$as_nl"'
+as_echo_n='/usr/ucb/echo -n'
+else
+as_echo_body='eval expr "X$1" : "X\\(.*\\)"'
+as_echo_n_body='eval
+arg=$1;
+case $arg in #(
+*"$as_nl"*)
+	expr "X$arg" : "X\\(.*\\)$as_nl";
+	arg=`expr "X$arg" : ".*$as_nl\\(.*\\)"`;;
+esac;
+expr "X$arg" : "X\\(.*\\)" | tr -d "$as_nl"
+'
+export as_echo_n_body
+as_echo_n='sh -c $as_echo_n_body as_echo'
+fi
+export as_echo_body
+as_echo='sh -c $as_echo_body as_echo'
+fi
+# The user is always right.
+if test "${PATH_SEPARATOR+set}" != set; then
+PATH_SEPARATOR=:
+(PATH='/bin;/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 && {
+(PATH='/bin:/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 ||
+PATH_SEPARATOR=';'
+}
+fi
+# IFS
+# We need space, tab and new line, in precisely that order.  Quoting is
+# there to prevent editors from complaining about space-tab.
+# (If _AS_PATH_WALK were called with IFS unset, it would disable word
+# splitting by setting IFS to empty value.)
+IFS=" ""	$as_nl"
+# Find who we are.  Look in the path if we contain no directory separator.
+as_myself=
+case $0 in #((
+*[\\/]* ) as_myself=$0 ;;
+*) as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+IFS=$as_save_IFS
+test -z "$as_dir" && as_dir=.
+test -r "$as_dir/$0" && as_myself=$as_dir/$0 && break
+done
+IFS=$as_save_IFS
+;;
+esac
+# We did not find ourselves, most probably we were run as `sh COMMAND'
+# in which case we are not to be found in the path.
+if test "x$as_myself" = x; then
+as_myself=$0
+fi
+if test ! -f "$as_myself"; then
+$as_echo "$as_myself: error: cannot find myself; rerun with an absolute file name" >&2
+exit 1
+fi
+# Unset variables that we do not need and which cause bugs (e.g. in
+# pre-3.0 UWIN ksh).  But do not cause bugs in bash 2.01; the "|| exit 1"
+# suppresses any "Segmentation fault" message there.  '((' could
+# trigger a bug in pdksh 5.2.14.
+for as_var in BASH_ENV ENV MAIL MAILPATH
+do eval test x\${$as_var+set} = xset \
+&& ( (unset $as_var) || exit 1) >/dev/null 2>&1 && unset $as_var || :
+done
+PS1='$ '
+PS2='> '
+PS4='+ '
+# NLS nuisances.
+LC_ALL=C
+export LC_ALL
+LANGUAGE=C
+export LANGUAGE
+# CDPATH.
+(unset CDPATH) >/dev/null 2>&1 && unset CDPATH
+# as_fn_error STATUS ERROR [LINENO LOG_FD]
+# ----------------------------------------
+# Output "`basename $0`: error: ERROR" to stderr. If LINENO and LOG_FD are
+# provided, also output the error to LOG_FD, referencing LINENO. Then exit the
+# script with STATUS, using 1 if that was 0.
+as_fn_error ()
+{
+as_status=$1; test $as_status -eq 0 && as_status=1
+if test "$4"; then
+as_lineno=${as_lineno-"$3"} as_lineno_stack=as_lineno_stack=$as_lineno_stack
+$as_echo "$as_me:${as_lineno-$LINENO}: error: $2" >&$4
+fi
+$as_echo "$as_me: error: $2" >&2
+as_fn_exit $as_status
+} # as_fn_error
+# as_fn_set_status STATUS
+# -----------------------
+# Set $? to STATUS, without forking.
+as_fn_set_status ()
+{
+return $1
+} # as_fn_set_status
+# as_fn_exit STATUS
+# -----------------
+# Exit the shell with STATUS, even in a "trap 0" or "set -e" context.
+as_fn_exit ()
+{
+set +e
+as_fn_set_status $1
+exit $1
+} # as_fn_exit
+# as_fn_unset VAR
+# ---------------
+# Portably unset VAR.
+as_fn_unset ()
+{
+{ eval $1=; unset $1;}
+}
+as_unset=as_fn_unset
+# as_fn_append VAR VALUE
+# ----------------------
+# Append the text in VALUE to the end of the definition contained in VAR. Take
+# advantage of any shell optimizations that allow amortized linear growth over
+# repeated appends, instead of the typical quadratic growth present in naive
+# implementations.
+if (eval "as_var=1; as_var+=2; test x\$as_var = x12") 2>/dev/null; then :
+eval 'as_fn_append ()
+{
+eval $1+=\$2
+}'
+else
+as_fn_append ()
+{
+eval $1=\$$1\$2
+}
+fi # as_fn_append
+# as_fn_arith ARG...
+# ------------------
+# Perform arithmetic evaluation on the ARGs, and store the result in the
+# global $as_val. Take advantage of shells that can avoid forks. The arguments
+# must be portable across $(()) and expr.
+if (eval "test \$(( 1 + 1 )) = 2") 2>/dev/null; then :
+eval 'as_fn_arith ()
+{
+as_val=$(( $* ))
+}'
+else
+as_fn_arith ()
+{
+as_val=`expr "$@" || test $? -eq 1`
+}
+fi # as_fn_arith
+if expr a : '\(a\)' >/dev/null 2>&1 &&
+test "X`expr 00001 : '.*\(...\)'`" = X001; then
+as_expr=expr
+else
+as_expr=false
+fi
+if (basename -- /) >/dev/null 2>&1 && test "X`basename -- / 2>&1`" = "X/"; then
+as_basename=basename
+else
+as_basename=false
+fi
+if (as_dir=`dirname -- /` && test "X$as_dir" = X/) >/dev/null 2>&1; then
+as_dirname=dirname
+else
+as_dirname=false
+fi
+as_me=`$as_basename -- "$0" ||
+$as_expr X/"$0" : '.*/\([^/][^/]*\)/*$' \| \
+	 X"$0" : 'X\(//\)$' \| \
+	 X"$0" : 'X\(/\)' \| . 2>/dev/null ||
+$as_echo X/"$0" |
+sed '/^.*\/\([^/][^/]*\)\/*$/{
+	    s//\1/
+	    q
+	  }
+	  /^X\/\(\/\/\)$/{
+	    s//\1/
+	    q
+	  }
+	  /^X\/\(\/\).*/{
+	    s//\1/
+	    q
+	  }
+	  s/.*/./; q'`
+# Avoid depending upon Character Ranges.
+as_cr_letters='abcdefghijklmnopqrstuvwxyz'
+as_cr_LETTERS='ABCDEFGHIJKLMNOPQRSTUVWXYZ'
+as_cr_Letters=$as_cr_letters$as_cr_LETTERS
+as_cr_digits='0123456789'
+as_cr_alnum=$as_cr_Letters$as_cr_digits
+ECHO_C= ECHO_N= ECHO_T=
+case `echo -n x` in #(((((
+-n*)
+case `echo 'xy\c'` in
+*c*) ECHO_T='	';;	# ECHO_T is single tab character.
+xy)  ECHO_C='\c';;
+*)   echo `echo ksh88 bug on AIX 6.1` > /dev/null
+ECHO_T='	';;
+esac;;
+*)
+ECHO_N='-n';;
+esac
+rm -f conf$$ conf$$.exe conf$$.file
+if test -d conf$$.dir; then
+rm -f conf$$.dir/conf$$.file
+else
+rm -f conf$$.dir
+mkdir conf$$.dir 2>/dev/null
+fi
+if (echo >conf$$.file) 2>/dev/null; then
+if ln -s conf$$.file conf$$ 2>/dev/null; then
+as_ln_s='ln -s'
+# ... but there are two gotchas:
+# 1) On MSYS, both `ln -s file dir' and `ln file dir' fail.
+# 2) DJGPP < 2.04 has no symlinks; `ln -s' creates a wrapper executable.
+# In both cases, we have to default to `cp -p'.
+ln -s conf$$.file conf$$.dir 2>/dev/null && test ! -f conf$$.exe ||
+as_ln_s='cp -p'
+elif ln conf$$.file conf$$ 2>/dev/null; then
+as_ln_s=ln
+else
+as_ln_s='cp -p'
+fi
+else
+as_ln_s='cp -p'
+fi
+rm -f conf$$ conf$$.exe conf$$.dir/conf$$.file conf$$.file
+rmdir conf$$.dir 2>/dev/null
+# as_fn_mkdir_p
+# -------------
+# Create "$as_dir" as a directory, including parents if necessary.
+as_fn_mkdir_p ()
+{
+case $as_dir in #(
+-*) as_dir=./$as_dir;;
+esac
+test -d "$as_dir" || eval $as_mkdir_p || {
+as_dirs=
+while :; do
+case $as_dir in #(
+*\'*) as_qdir=`$as_echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #'(
+*) as_qdir=$as_dir;;
+esac
+as_dirs="'$as_qdir' $as_dirs"
+as_dir=`$as_dirname -- "$as_dir" ||
+$as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
+	 X"$as_dir" : 'X\(//\)[^/]' \| \
+	 X"$as_dir" : 'X\(//\)$' \| \
+	 X"$as_dir" : 'X\(/\)' \| . 2>/dev/null ||
+$as_echo X"$as_dir" |
+sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
+	    s//\1/
+	    q
+	  }
+	  /^X\(\/\/\)[^/].*/{
+	    s//\1/
+	    q
+	  }
+	  /^X\(\/\/\)$/{
+	    s//\1/
+	    q
+	  }
+	  /^X\(\/\).*/{
+	    s//\1/
+	    q
+	  }
+	  s/.*/./; q'`
+test -d "$as_dir" && break
+done
+test -z "$as_dirs" || eval "mkdir $as_dirs"
+} || test -d "$as_dir" || as_fn_error $? "cannot create directory $as_dir"
+} # as_fn_mkdir_p
+if mkdir -p . 2>/dev/null; then
+as_mkdir_p='mkdir -p "$as_dir"'
+else
+test -d ./-p && rmdir ./-p
+as_mkdir_p=false
+fi
+if test -x / >/dev/null 2>&1; then
+as_test_x='test -x'
+else
+if ls -dL / >/dev/null 2>&1; then
+as_ls_L_option=L
+else
+as_ls_L_option=
+fi
+as_test_x='
+eval sh -c '\''
+if test -d "$1"; then
+	test -d "$1/.";
+else
+	case $1 in #(
+	-*)set "./$1";;
+	esac;
+	case `ls -ld'$as_ls_L_option' "$1" 2>/dev/null` in #((
+	???[sx]*):;;*)false;;esac;fi
+'\'' sh
+'
+fi
+as_executable_p=$as_test_x
+# Sed expression to map a string onto a valid CPP name.
+as_tr_cpp="eval sed 'y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g'"
+# Sed expression to map a string onto a valid variable name.
+as_tr_sh="eval sed 'y%*+%pp%;s%[^_$as_cr_alnum]%_%g'"
+exec 6>&1
+## ----------------------------------- ##
+## Main body of $CONFIG_STATUS script. ##
+## ----------------------------------- ##
+_ASEOF
+test $as_write_fail = 0 && chmod +x $CONFIG_STATUS || ac_write_fail=1
+cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
+# Save the log message, to keep $0 and so on meaningful, and to
+# report actual input values of CONFIG_FILES etc. instead of their
+# values after options handling.
+ac_log="
+This file was extended by HTSlib $as_me 1.2.1, which was
+generated by GNU Autoconf 2.68.  Invocation command line was
+CONFIG_FILES    = $CONFIG_FILES
+CONFIG_HEADERS  = $CONFIG_HEADERS
+CONFIG_LINKS    = $CONFIG_LINKS
+CONFIG_COMMANDS = $CONFIG_COMMANDS
+$ $0 $@
+on `(hostname || uname -n) 2>/dev/null | sed 1q`
+"
+_ACEOF
+case $ac_config_files in *"
+"*) set x $ac_config_files; shift; ac_config_files=$*;;
+esac
+cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
+# Files that config.status was made for.
+config_files="$ac_config_files"
+_ACEOF
+cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
+ac_cs_usage="\
+\`$as_me' instantiates files and other configuration actions
+from templates according to the current configuration.  Unless the files
+and actions are specified as TAGs, all are instantiated by default.
+Usage: $0 [OPTION]... [TAG]...
+-h, --help       print this help, then exit
+-V, --version    print version number and configuration settings, then exit
+--config     print configuration, then exit
+-q, --quiet, --silent
+do not print progress messages
+-d, --debug      don't remove temporary files
+--recheck    update $as_me by reconfiguring in the same conditions
+--file=FILE[:TEMPLATE]
+instantiate the configuration file FILE
+Configuration files:
+$config_files
+Report bugs to <samtools-help@lists.sourceforge.net>.
+HTSlib home page: <http://www.htslib.org/>."
+_ACEOF
+cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
+ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
+ac_cs_version="\\
+HTSlib config.status 1.2.1
+configured by $0, generated by GNU Autoconf 2.68,
+with options \\"\$ac_cs_config\\"
+Copyright (C) 2010 Free Software Foundation, Inc.
+This config.status script is free software; the Free Software Foundation
+gives unlimited permission to copy, distribute and modify it."
+ac_pwd='$ac_pwd'
+srcdir='$srcdir'
+test -n "\$AWK" || AWK=awk
+_ACEOF
+cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
+# The default lists apply if the user does not specify any file.
+ac_need_defaults=:
+while test $# != 0
+do
+case $1 in
+--*=?*)
+ac_option=`expr "X$1" : 'X\([^=]*\)='`
+ac_optarg=`expr "X$1" : 'X[^=]*=\(.*\)'`
+ac_shift=:
+;;
+--*=)
+ac_option=`expr "X$1" : 'X\([^=]*\)='`
+ac_optarg=
+ac_shift=:
+;;
+*)
+ac_option=$1
+ac_optarg=$2
+ac_shift=shift
+;;
+esac
+case $ac_option in
+# Handling of the options.
+-recheck | --recheck | --rechec | --reche | --rech | --rec | --re | --r)
+ac_cs_recheck=: ;;
+--version | --versio | --versi | --vers | --ver | --ve | --v | -V )
+$as_echo "$ac_cs_version"; exit ;;
+--config | --confi | --conf | --con | --co | --c )
+$as_echo "$ac_cs_config"; exit ;;
+--debug | --debu | --deb | --de | --d | -d )
+debug=: ;;
+--file | --fil | --fi | --f )
+$ac_shift
+case $ac_optarg in
+*\'*) ac_optarg=`$as_echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"` ;;
+'') as_fn_error $? "missing file argument" ;;
+esac
+as_fn_append CONFIG_FILES " '$ac_optarg'"
+ac_need_defaults=false;;
+--he | --h |  --help | --hel | -h )
+$as_echo "$ac_cs_usage"; exit ;;
+-q | -quiet | --quiet | --quie | --qui | --qu | --q \
+| -silent | --silent | --silen | --sile | --sil | --si | --s)
+ac_cs_silent=: ;;
+# This is an error.
+-*) as_fn_error $? "unrecognized option: \`$1'
+Try \`$0 --help' for more information." ;;
+*) as_fn_append ac_config_targets " $1"
+ac_need_defaults=false ;;
+esac
+shift
+done
+ac_configure_extra_args=
+if $ac_cs_silent; then
+exec 6>/dev/null
+ac_configure_extra_args="$ac_configure_extra_args --silent"
+fi
+_ACEOF
+cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
+if \$ac_cs_recheck; then
+set X '$SHELL' '$0' $ac_configure_args \$ac_configure_extra_args --no-create --no-recursion
+shift
+\$as_echo "running CONFIG_SHELL=$SHELL \$*" >&6
+CONFIG_SHELL='$SHELL'
+export CONFIG_SHELL
+exec "\$@"
+fi
+_ACEOF
+cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
+exec 5>>config.log
+{
+echo
+sed 'h;s/./-/g;s/^.../## /;s/...$/ ##/;p;x;p;x' <<_ASBOX
+## Running $as_me. ##
+_ASBOX
+$as_echo "$ac_log"
+} >&5
+_ACEOF
+cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
+_ACEOF
+cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
+# Handling of arguments.
+for ac_config_target in $ac_config_targets
+do
+case $ac_config_target in
+"config.mk") CONFIG_FILES="$CONFIG_FILES config.mk" ;;
+*) as_fn_error $? "invalid argument: \`$ac_config_target'" "$LINENO" 5;;
+esac
+done
+# If the user did not use the arguments to specify the items to instantiate,
+# then the envvar interface is used.  Set only those that are not.
+# We use the long form for the default assignment because of an extremely
+# bizarre bug on SunOS 4.1.3.
+if $ac_need_defaults; then
+test "${CONFIG_FILES+set}" = set || CONFIG_FILES=$config_files
+fi
+# Have a temporary directory for convenience.  Make it in the build tree
+# simply because there is no reason against having it here, and in addition,
+# creating and moving files from /tmp can sometimes cause problems.
+# Hook for its removal unless debugging.
+# Note that there is a small window in which the directory will not be cleaned:
+# after its creation but before its name has been assigned to `$tmp'.
+$debug ||
+{
+tmp= ac_tmp=
+trap 'exit_status=$?
+: "${ac_tmp:=$tmp}"
+{ test ! -d "$ac_tmp" || rm -fr "$ac_tmp"; } && exit $exit_status
+' 0
+trap 'as_fn_exit 1' 1 2 13 15
+}
+# Create a (secure) tmp directory for tmp files.
+{
+tmp=`(umask 077 && mktemp -d "./confXXXXXX") 2>/dev/null` &&
+test -d "$tmp"
+}  ||
+{
+tmp=./conf$$-$RANDOM
+(umask 077 && mkdir "$tmp")
+} || as_fn_error $? "cannot create a temporary directory in ." "$LINENO" 5
+ac_tmp=$tmp
+# Set up the scripts for CONFIG_FILES section.
+# No need to generate them if there are no CONFIG_FILES.
+# This happens for instance with `./config.status config.h'.
+if test -n "$CONFIG_FILES"; then
+ac_cr=`echo X | tr X '\015'`
+# On cygwin, bash can eat \r inside `` if the user requested igncr.
+# But we know of no other shell where ac_cr would be empty at this
+# point, so we can use a bashism as a fallback.
+if test "x$ac_cr" = x; then
+eval ac_cr=\$\'\\r\'
+fi
+ac_cs_awk_cr=`$AWK 'BEGIN { print "a\rb" }' </dev/null 2>/dev/null`
+if test "$ac_cs_awk_cr" = "a${ac_cr}b"; then
+ac_cs_awk_cr='\\r'
+else
+ac_cs_awk_cr=$ac_cr
+fi
+echo 'BEGIN {' >"$ac_tmp/subs1.awk" &&
+_ACEOF
+{
+echo "cat >conf$$subs.awk <<_ACEOF" &&
+echo "$ac_subst_vars" | sed 's/.*/&!$&$ac_delim/' &&
+echo "_ACEOF"
+} >conf$$subs.sh ||
+as_fn_error $? "could not make $CONFIG_STATUS" "$LINENO" 5
+ac_delim_num=`echo "$ac_subst_vars" | grep -c '^'`
+ac_delim='%!_!# '
+for ac_last_try in false false false false false :; do
+. ./conf$$subs.sh ||
+as_fn_error $? "could not make $CONFIG_STATUS" "$LINENO" 5
+ac_delim_n=`sed -n "s/.*$ac_delim\$/X/p" conf$$subs.awk | grep -c X`
+if test $ac_delim_n = $ac_delim_num; then
+break
+elif $ac_last_try; then
+as_fn_error $? "could not make $CONFIG_STATUS" "$LINENO" 5
+else
+ac_delim="$ac_delim!$ac_delim _$ac_delim!! "
+fi
+done
+rm -f conf$$subs.sh
+cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
+cat >>"\$ac_tmp/subs1.awk" <<\\_ACAWK &&
+_ACEOF
+sed -n '
+h
+s/^/S["/; s/!.*/"]=/
+p
+g
+s/^[^!]*!//
+:repl
+t repl
+s/'"$ac_delim"'$//
+t delim
+:nl
+h
+s/\(.\{148\}\)..*/\1/
+t more1
+s/["\\]/\\&/g; s/^/"/; s/$/\\n"\\/
+p
+n
+b repl
+:more1
+s/["\\]/\\&/g; s/^/"/; s/$/"\\/
+p
+g
+s/.\{148\}//
+t nl
+:delim
+h
+s/\(.\{148\}\)..*/\1/
+t more2
+s/["\\]/\\&/g; s/^/"/; s/$/"/
+p
+b
+:more2
+s/["\\]/\\&/g; s/^/"/; s/$/"\\/
+p
+g
+s/.\{148\}//
+t delim
+' <conf$$subs.awk | sed '
+/^[^""]/{
+N
+s/\n//
+}
+' >>$CONFIG_STATUS || ac_write_fail=1
+rm -f conf$$subs.awk
+cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
+_ACAWK
+cat >>"\$ac_tmp/subs1.awk" <<_ACAWK &&
+for (key in S) S_is_set[key] = 1
+FS = ""
+}
+{
+line = $ 0
+nfields = split(line, field, "@")
+substed = 0
+len = length(field[1])
+for (i = 2; i < nfields; i++) {
+key = field[i]
+keylen = length(key)
+if (S_is_set[key]) {
+value = S[key]
+line = substr(line, 1, len) "" value "" substr(line, len + keylen + 3)
+len += length(value) + length(field[++i])
+substed = 1
+} else
+len += 1 + keylen
+}
+print line
+}
+_ACAWK
+_ACEOF
+cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
+if sed "s/$ac_cr//" < /dev/null > /dev/null 2>&1; then
+sed "s/$ac_cr\$//; s/$ac_cr/$ac_cs_awk_cr/g"
+else
+cat
+fi < "$ac_tmp/subs1.awk" > "$ac_tmp/subs.awk" \
+|| as_fn_error $? "could not setup config files machinery" "$LINENO" 5
+_ACEOF
+# VPATH may cause trouble with some makes, so we remove sole $(srcdir),
+# ${srcdir} and @srcdir@ entries from VPATH if srcdir is ".", strip leading and
+# trailing colons and then remove the whole line if VPATH becomes empty
+# (actually we leave an empty line to preserve line numbers).
+if test "x$srcdir" = x.; then
+ac_vpsub='/^[	 ]*VPATH[	 ]*=[	 ]*/{
+h
+s///
+s/^/:/
+s/[	 ]*$/:/
+s/:\$(srcdir):/:/g
+s/:\${srcdir}:/:/g
+s/:@srcdir@:/:/g
+s/^:*//
+s/:*$//
+x
+s/\(=[	 ]*\).*/\1/
+G
+s/\n//
+s/^[^=]*=[	 ]*$//
+}'
+fi
+cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
+fi # test -n "$CONFIG_FILES"
+eval set X "  :F $CONFIG_FILES      "
+shift
+for ac_tag
+do
+case $ac_tag in
+:[FHLC]) ac_mode=$ac_tag; continue;;
+esac
+case $ac_mode$ac_tag in
+:[FHL]*:*);;
+:L* | :C*:*) as_fn_error $? "invalid tag \`$ac_tag'" "$LINENO" 5;;
+:[FH]-) ac_tag=-:-;;
+:[FH]*) ac_tag=$ac_tag:$ac_tag.in;;
+esac
+ac_save_IFS=$IFS
+IFS=:
+set x $ac_tag
+IFS=$ac_save_IFS
+shift
+ac_file=$1
+shift
+case $ac_mode in
+:L) ac_source=$1;;
+:[FH])
+ac_file_inputs=
+for ac_f
+do
+case $ac_f in
+-) ac_f="$ac_tmp/stdin";;
+*) # Look for the file first in the build tree, then in the source tree
+	 # (if the path is not absolute).  The absolute path cannot be DOS-style,
+	 # because $ac_f cannot contain `:'.
+	 test -f "$ac_f" ||
+	   case $ac_f in
+	   [\\/$]*) false;;
+	   *) test -f "$srcdir/$ac_f" && ac_f="$srcdir/$ac_f";;
+	   esac ||
+	   as_fn_error 1 "cannot find input file: \`$ac_f'" "$LINENO" 5;;
+esac
+case $ac_f in *\'*) ac_f=`$as_echo "$ac_f" | sed "s/'/'\\\\\\\\''/g"`;; esac
+as_fn_append ac_file_inputs " '$ac_f'"
+done
+# Let's still pretend it is `configure' which instantiates (i.e., don't
+# use $as_me), people would be surprised to read:
+#    /* config.h.  Generated by config.status.  */
+configure_input='Generated from '`
+	  $as_echo "$*" | sed 's|^[^:]*/||;s|:[^:]*/|, |g'
+	`' by configure.'
+if test x"$ac_file" != x-; then
+configure_input="$ac_file.  $configure_input"
+{ $as_echo "$as_me:${as_lineno-$LINENO}: creating $ac_file" >&5
+$as_echo "$as_me: creating $ac_file" >&6;}
+fi
+# Neutralize special characters interpreted by sed in replacement strings.
+case $configure_input in #(
+*\&* | *\|* | *\\* )
+ac_sed_conf_input=`$as_echo "$configure_input" |
+sed 's/[\\\\&|]/\\\\&/g'`;; #(
+*) ac_sed_conf_input=$configure_input;;
+esac
+case $ac_tag in
+*:-:* | *:-) cat >"$ac_tmp/stdin" \
+|| as_fn_error $? "could not create $ac_file" "$LINENO" 5 ;;
+esac
+;;
+esac
+ac_dir=`$as_dirname -- "$ac_file" ||
+$as_expr X"$ac_file" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
+	 X"$ac_file" : 'X\(//\)[^/]' \| \
+	 X"$ac_file" : 'X\(//\)$' \| \
+	 X"$ac_file" : 'X\(/\)' \| . 2>/dev/null ||
+$as_echo X"$ac_file" |
+sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
+	    s//\1/
+	    q
+	  }
+	  /^X\(\/\/\)[^/].*/{
+	    s//\1/
+	    q
+	  }
+	  /^X\(\/\/\)$/{
+	    s//\1/
+	    q
+	  }
+	  /^X\(\/\).*/{
+	    s//\1/
+	    q
+	  }
+	  s/.*/./; q'`
+as_dir="$ac_dir"; as_fn_mkdir_p
+ac_builddir=.
+case "$ac_dir" in
+.) ac_dir_suffix= ac_top_builddir_sub=. ac_top_build_prefix= ;;
+*)
+ac_dir_suffix=/`$as_echo "$ac_dir" | sed 's|^\.[\\/]||'`
+# A ".." for each directory in $ac_dir_suffix.
+ac_top_builddir_sub=`$as_echo "$ac_dir_suffix" | sed 's|/[^\\/]*|/..|g;s|/||'`
+case $ac_top_builddir_sub in
+"") ac_top_builddir_sub=. ac_top_build_prefix= ;;
+*)  ac_top_build_prefix=$ac_top_builddir_sub/ ;;
+esac ;;
+esac
+ac_abs_top_builddir=$ac_pwd
+ac_abs_builddir=$ac_pwd$ac_dir_suffix
+# for backward compatibility:
+ac_top_builddir=$ac_top_build_prefix
+case $srcdir in
+.)  # We are building in place.
+ac_srcdir=.
+ac_top_srcdir=$ac_top_builddir_sub
+ac_abs_top_srcdir=$ac_pwd ;;
+[\\/]* | ?:[\\/]* )  # Absolute name.
+ac_srcdir=$srcdir$ac_dir_suffix;
+ac_top_srcdir=$srcdir
+ac_abs_top_srcdir=$srcdir ;;
+*) # Relative name.
+ac_srcdir=$ac_top_build_prefix$srcdir$ac_dir_suffix
+ac_top_srcdir=$ac_top_build_prefix$srcdir
+ac_abs_top_srcdir=$ac_pwd/$srcdir ;;
+esac
+ac_abs_srcdir=$ac_abs_top_srcdir$ac_dir_suffix
+case $ac_mode in
+:F)
+#
+# CONFIG_FILE
+#
+_ACEOF
+cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
+# If the template does not know about datarootdir, expand it.
+# FIXME: This hack should be removed a few years after 2.60.
+ac_datarootdir_hack=; ac_datarootdir_seen=
+ac_sed_dataroot='
+/datarootdir/ {
+p
+q
+}
+/@datadir@/p
+/@docdir@/p
+/@infodir@/p
+/@localedir@/p
+/@mandir@/p'
+case `eval "sed -n \"\$ac_sed_dataroot\" $ac_file_inputs"` in
+*datarootdir*) ac_datarootdir_seen=yes;;
+*@datadir@*|*@docdir@*|*@infodir@*|*@localedir@*|*@mandir@*)
+{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: $ac_file_inputs seems to ignore the --datarootdir setting" >&5
+$as_echo "$as_me: WARNING: $ac_file_inputs seems to ignore the --datarootdir setting" >&2;}
+_ACEOF
+cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
+ac_datarootdir_hack='
+s&@datadir@&$datadir&g
+s&@docdir@&$docdir&g
+s&@infodir@&$infodir&g
+s&@localedir@&$localedir&g
+s&@mandir@&$mandir&g
+s&\\\${datarootdir}&$datarootdir&g' ;;
+esac
+_ACEOF
+# Neutralize VPATH when `$srcdir' = `.'.
+# Shell code in configure.ac might set extrasub.
+# FIXME: do we really want to maintain this feature?
+cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
+ac_sed_extra="$ac_vpsub
+$extrasub
+_ACEOF
+cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
+:t
+/@[a-zA-Z_][a-zA-Z_0-9]*@/!b
+s|@configure_input@|$ac_sed_conf_input|;t t
+s&@top_builddir@&$ac_top_builddir_sub&;t t
+s&@top_build_prefix@&$ac_top_build_prefix&;t t
+s&@srcdir@&$ac_srcdir&;t t
+s&@abs_srcdir@&$ac_abs_srcdir&;t t
+s&@top_srcdir@&$ac_top_srcdir&;t t
+s&@abs_top_srcdir@&$ac_abs_top_srcdir&;t t
+s&@builddir@&$ac_builddir&;t t
+s&@abs_builddir@&$ac_abs_builddir&;t t
+s&@abs_top_builddir@&$ac_abs_top_builddir&;t t
+$ac_datarootdir_hack
+"
+eval sed \"\$ac_sed_extra\" "$ac_file_inputs" | $AWK -f "$ac_tmp/subs.awk" \
+>$ac_tmp/out || as_fn_error $? "could not create $ac_file" "$LINENO" 5
+test -z "$ac_datarootdir_hack$ac_datarootdir_seen" &&
+{ ac_out=`sed -n '/\${datarootdir}/p' "$ac_tmp/out"`; test -n "$ac_out"; } &&
+{ ac_out=`sed -n '/^[	 ]*datarootdir[	 ]*:*=/p' \
+"$ac_tmp/out"`; test -z "$ac_out"; } &&
+{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: $ac_file contains a reference to the variable \`datarootdir'
+which seems to be undefined.  Please make sure it is defined" >&5
+$as_echo "$as_me: WARNING: $ac_file contains a reference to the variable \`datarootdir'
+which seems to be undefined.  Please make sure it is defined" >&2;}
+rm -f "$ac_tmp/stdin"
+case $ac_file in
+-) cat "$ac_tmp/out" && rm -f "$ac_tmp/out";;
+*) rm -f "$ac_file" && mv "$ac_tmp/out" "$ac_file";;
+esac \
+|| as_fn_error $? "could not create $ac_file" "$LINENO" 5
+;;
+esac
+done # for ac_tag
+as_fn_exit 0
+_ACEOF
+ac_clean_files=$ac_clean_files_save
+test $ac_write_fail = 0 ||
+as_fn_error $? "write failure creating $CONFIG_STATUS" "$LINENO" 5
+# configure is writing to config.log, and then calls config.status.
+# config.status does its own redirection, appending to config.log.
+# Unfortunately, on DOS this fails, as config.log is still kept open
+# by configure, so config.status won't be able to write to it; its
+# output is simply discarded.  So we exec the FD to /dev/null,
+# effectively closing config.log, so it can be properly (re)opened and
+# appended to by config.status.  When coming back to configure, we
+# need to make the FD available again.
+if test "$no_create" != yes; then
+ac_cs_success=:
+ac_config_status_args=
+test "$silent" = yes &&
+ac_config_status_args="$ac_config_status_args --quiet"
+exec 5>/dev/null
+$SHELL $CONFIG_STATUS $ac_config_status_args || ac_cs_success=false
+exec 5>>config.log
+# Use ||, not &&, to avoid exiting from the if with $? = 1, which
+# would make configure fail if this is the last instruction.
+$ac_cs_success || as_fn_exit 1
+fi
+if test -n "$ac_unrecognized_opts" && test "$enable_option_checking" != no; then
+{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: unrecognized options: $ac_unrecognized_opts" >&5
+$as_echo "$as_me: WARNING: unrecognized options: $ac_unrecognized_opts" >&2;}
+fi

Mercurial > repos > youngkim > ezbamqc

comparison ezBAMQC/src/htslib/configure @ 0:dfa3745e5fd8