Mercurial > repos > youngkim > ezbamqc
comparison ezBAMQC/src/htslib/htslib_vars.mk @ 0:dfa3745e5fd8
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| author | youngkim |
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| date | Thu, 24 Mar 2016 17:12:52 -0400 |
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| -1:000000000000 | 0:dfa3745e5fd8 |
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| 1 # Makefile variables useful for third-party code using htslib's public API. | |
| 2 # | |
| 3 # Copyright (C) 2013-2014 Genome Research Ltd. | |
| 4 # | |
| 5 # Author: John Marshall <jm18@sanger.ac.uk> | |
| 6 # | |
| 7 # Permission is hereby granted, free of charge, to any person obtaining a copy | |
| 8 # of this software and associated documentation files (the "Software"), to deal | |
| 9 # in the Software without restriction, including without limitation the rights | |
| 10 # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell | |
| 11 # copies of the Software, and to permit persons to whom the Software is | |
| 12 # furnished to do so, subject to the following conditions: | |
| 13 # | |
| 14 # The above copyright notice and this permission notice shall be included in | |
| 15 # all copies or substantial portions of the Software. | |
| 16 # | |
| 17 # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR | |
| 18 # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, | |
| 19 # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL | |
| 20 # THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER | |
| 21 # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING | |
| 22 # FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER | |
| 23 # DEALINGS IN THE SOFTWARE. | |
| 24 | |
| 25 # These variables can be used to express dependencies on htslib headers. | |
| 26 # See htslib.mk for details. | |
| 27 | |
| 28 htslib_bgzf_h = $(HTSPREFIX)htslib/bgzf.h | |
| 29 htslib_faidx_h = $(HTSPREFIX)htslib/faidx.h | |
| 30 htslib_hfile_h = $(HTSPREFIX)htslib/hfile.h $(htslib_hts_defs_h) | |
| 31 htslib_hts_h = $(HTSPREFIX)htslib/hts.h | |
| 32 htslib_hts_defs_h = $(HTSPREFIX)htslib/hts_defs.h | |
| 33 htslib_regidx_h = $(HTSPREFIX)htslib/regidx.h | |
| 34 htslib_sam_h = $(HTSPREFIX)htslib/sam.h $(htslib_hts_h) | |
| 35 htslib_synced_bcf_reader_h = $(HTSPREFIX)htslib/synced_bcf_reader.h $(htslib_hts_h) $(htslib_vcf_h) $(htslib_tbx_h) | |
| 36 htslib_tbx_h = $(HTSPREFIX)htslib/tbx.h $(htslib_hts_h) | |
| 37 htslib_vcf_h = $(HTSPREFIX)htslib/vcf.h $(htslib_hts_h) $(HTSPREFIX)htslib/kstring.h | |
| 38 htslib_vcf_sweep_h = $(HTSPREFIX)htslib/vcf_sweep.h $(htslib_hts_h) $(htslib_vcf_h) | |
| 39 htslib_vcfutils_h = $(HTSPREFIX)htslib/vcfutils.h $(htslib_vcf_h) |