Mercurial > repos > youngkim > ezbamqc

comparison ezBAMQC/src/htslib/test/fieldarith.sam @ 0:dfa3745e5fd8

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author youngkim
date Thu, 24 Mar 2016 17:12:52 -0400
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:dfa3745e5fd8
1 @SQ SN:one LN:1000
2 @SQ SN:two LN:500
3 @CO For each SAM record that has each listed aux field, performs these tests:
4 @CO XQ is the expected result for bam_cigar2qlen()
5 @CO XR is the expected result for bam_cigar2rlen()
6 @CO XE is the expected result for bam_endpos()
7 @CO (Note that these are all zero-based, while POS is one-based in SAM)
8 r1 0 one 50 20 8M * 0 0 ATGCATGC qqqqqqqq XQ:i:8 XR:i:8 XE:i:57
9 r2 0 one 100 20 50M * 0 0 ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCAT qqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqq XQ:i:50 XR:i:50 XE:i:149
10 unmapped 5 two 200 0 * two 200 0 ATGCATGC qqqqqqqq XQ:i:0 XR:i:0 XE:i:200
11 hascigar 5 two 200 0 6M2S two 200 0 ATGCATGC qqqqqqqq XQ:i:8 XR:i:6 XE:i:200
12 s1 0 one 300 20 2M * 0 0 AT qq XQ:i:2 XR:i:2 XE:i:301
13 su1 4 * 0 0 * * 0 0 AT qq XQ:i:0 XR:i:0 XE:i:0
14 su2 5 two 400 0 * two 400 0 AT qq XQ:i:0 XR:i:0 XE:i:400
15 su3 4 one 500 0 2M * 0 0 AT qq XQ:i:2 XR:i:2 XE:i:500