Mercurial > repos > youngkim > ezbamqc
comparison ezBAMQC/test-data/output/data/smp0.res.txt @ 0:dfa3745e5fd8
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| author | youngkim |
|---|---|
| date | Thu, 24 Mar 2016 17:12:52 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:dfa3745e5fd8 |
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| 1 filename /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/data/smp0.res.txt | |
| 2 is_pairEnd 0 | |
| 3 clipping_plot_file /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp0.clipping_profile.png | |
| 4 mapq_plot_file /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp0.mapq_profile.png | |
| 5 mapq_file /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/data/smp0.mapq_profile.xls | |
| 6 read_cov_plot_file /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp0.geneBodyCoverage.png | |
| 7 trans_cov_plot_file /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp0.TransCoverage.png | |
| 8 insert_plot_file /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp0.inner_distance_plot.png | |
| 9 insert_file /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/data/smp0.inner_distance_freq.txt | |
| 10 read_dist_plot_file1 /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp0.read_distr.png | |
| 11 read_dist_plot_file2 /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp0.read_distr_pie.png | |
| 12 readLen_plot_file /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp0.readlen_profile.png | |
| 13 geneCount_file /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/data/smp0.geneAbundance.txt | |
| 14 seqDeDup_percent 0.000000 | |
| 15 posDeDup_percent 0.000000 | |
| 16 no_clipping 0 | |
| 17 no_rRNA 0 | |
| 18 total_reads 77686 | |
| 19 uniq_mapped_reads 64349 | |
| 20 multi_mapped_reads 13337 | |
| 21 unmapped_reads 0 | |
| 22 low_qual 0 | |
| 23 low_qual_read1 0 | |
| 24 low_qual_read2 0 | |
| 25 pcr_dup 0 | |
| 26 rRNA_read 8521 | |
| 27 cds_read 24065 | |
| 28 utr5_read 1500 | |
| 29 utr3_read 15884 | |
| 30 intron_read 8486 | |
| 31 itgup1k_read 169 | |
| 32 itgdn1k_read 452 | |
| 33 itg_read 13287 | |
| 34 unmapped_read1 0 | |
| 35 unmapped_read2 0 | |
| 36 mapped_read1 0 | |
| 37 mapped_read2 0 | |
| 38 forward_read 31875 | |
| 39 reverse_read 32474 | |
| 40 paired_reads 0 | |
| 41 mapped_plus_minus 0 | |
| 42 mapped_plus_plus 0 | |
| 43 mapped_minus_plus 0 | |
| 44 mapped_minus_minus 0 | |
| 45 ins_read 0 | |
| 46 del_read 0 | |
| 47 noSplice 50449 | |
| 48 splice 13900 | |
| 49 paired_diff_chrom 0 |