Mercurial > repos > youngkim > ezbamqc
diff cshl_geneGTF.loc.sample @ 15:28cebcc7f774
Uploaded
| author | cshl-bsr |
|---|---|
| date | Wed, 30 Mar 2016 12:15:18 -0400 |
| parents | 0c5c414c3407 |
| children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/cshl_geneGTF.loc.sample Wed Mar 30 12:15:18 2016 -0400 @@ -0,0 +1,20 @@ +## +## Location of gene annotations GTF +## +## Format is: +## value<TAB>Name<TAB>dbkey<TAB>ID +## +## Name can contain spaces + +/localdata1/annotations/GTF/latest/hg19_refGene.gtf hg19 UCSC refSeq hg19 hg19_refgene +/localdata1/annotations/GTF/latest/hg18_refGene.gtf hg18 UCSC refSeq hg18 hg18_refgene +/localdata1/annotations/GTF/latest/mm10_refGene.gtf mm10 UCSC refSeq mm10 mm10_refgene +/localdata1/annotations/GTF/latest/mm9_refGene.gtf mm9 UCSC refSeq mm9 mm9_refgene +/localdata1/annotations/GTF/latest/dm3_refGene.gtf dm3 UCSC refSeq dm3 dm3_refgene +/localdata1/annotations/GTF/refseq_2015_01_20/rn5_refGene.gtf rn5 UCSC refSeq rn5 rn5_refgene +#/localdata1/annotations/GTF/latest/rn4_refGene.gtf rn4 UCSC refSeq rn4 rn4_refgene +#/localdata1/annotations/GTF/latest/ce6_refGene.gtf ce6 UCSC refSeq ce6 ce6_refgene +#/localdata1/annotations/GTF/latest/ce10_refGene.gtf ce10 UCSC refSeq ce10 ce10_refgene +#/localdata1/annotations/GTF/igenomes_2014_08_28/ZmAGPv2_iGenome_genes.gtf Maize (AGPv2) iGenomes gene info ZmAGPv2 ZmAGPv2_genes +#/localdata1/annotations/GTF/igenomes_2014_08_28/ZmAGPv3_iGenome_genes.gtf Maize (AGPv3) iGenomes gene info ZmAGPv3 ZmAGPv3_genes +#/localdata1/annotations/GTF/igenomes_2014_08_28/tair10_iGenome_genes.gtf Arabidopsis (TAIR10) iGenomes gene info