Mercurial > repos > youngkim > ezbamqc
diff ezBAMQC/setup.py @ 9:6610eedd9fae
Uploaded
author | cshl-bsr |
---|---|
date | Wed, 30 Mar 2016 12:11:46 -0400 |
parents | dfa3745e5fd8 |
children |
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--- a/ezBAMQC/setup.py Wed Mar 30 12:03:10 2016 -0400 +++ b/ezBAMQC/setup.py Wed Mar 30 12:11:46 2016 -0400 @@ -89,28 +89,28 @@ sys.exit() BAMQC_HEADER = [ - 'src/bamqc/Constants.h', - 'src/bamqc/Coverage_prof.h', - 'src/bamqc/GeneFeatures.h', - 'src/bamqc/InnerDist_prof.h', - 'src/bamqc/IntervalTree.h', - 'src/bamqc/Mappability.h', - 'src/bamqc/parseBAM.h', - 'src/bamqc/ReadDup_prof.h', - 'src/bamqc/Results.h', - 'src/bamqc/rRNA.h' + 'src/ezBAMQC/Constants.h', + 'src/ezBAMQC/Coverage_prof.h', + 'src/ezBAMQC/GeneFeatures.h', + 'src/ezBAMQC/InnerDist_prof.h', + 'src/ezBAMQC/IntervalTree.h', + 'src/ezBAMQC/Mappability.h', + 'src/ezBAMQC/parseBAM.h', + 'src/ezBAMQC/ReadDup_prof.h', + 'src/ezBAMQC/Results.h', + 'src/ezBAMQC/rRNA.h' ] BAMQC_SOURCE = [ - 'src/bamqc/Coverage_prof.cpp', - 'src/bamqc/GeneFeatures.cpp', - 'src/bamqc/InnerDist_prof.cpp', - 'src/bamqc/IntervalTree.cpp', - 'src/bamqc/Mappability.cpp', - 'src/bamqc/parseBAM.cpp', - 'src/bamqc/ReadDup_prof.cpp', - 'src/bamqc/Results.cpp', - 'src/bamqc/rRNA.cpp' + 'src/ezBAMQC/Coverage_prof.cpp', + 'src/ezBAMQC/GeneFeatures.cpp', + 'src/ezBAMQC/InnerDist_prof.cpp', + 'src/ezBAMQC/IntervalTree.cpp', + 'src/ezBAMQC/Mappability.cpp', + 'src/ezBAMQC/parseBAM.cpp', + 'src/ezBAMQC/ReadDup_prof.cpp', + 'src/ezBAMQC/Results.cpp', + 'src/ezBAMQC/rRNA.cpp' ] ###TODO HAVE TO SPLIT INTO TWO AND MAKE THE A FILE @@ -174,7 +174,7 @@ BAMqc_CFLAGS = ['-fpermissive','-O3','-std=c++11','-Wno-error=declaration-after-statement'] BAMqc_DFLAGS = [('_FILE_OFFSET_BITS','64'),('_LARGEFILE64_SOURCE',''),('_CURSES_LIB','1')] BAMqc_INCLUDES = ['./src/htslib'] -BAMqc_HEADERS = ['./src/bamqc'] +BAMqc_HEADERS = ['./src/ezBAMQC'] BAMqc_EXTRA = ['build/lib.linux-x86_64-2.7/htslib.so'] htslib_CFLAGS = ['-Wno-error=declaration-after-statement'] @@ -182,7 +182,7 @@ htslib_DFLAGS = [('_FILE_OFFSET_BITS','64'),('_USE_KNETFILE','')] setup(name = "ezBAMQC", - version = "0.6.5", + version = "0.6.7", description = 'Quality control tools for NGS alignment file', keywords = 'Quality control BAM file', # make sure to add all the nessacary requires