diff ezBAMQC/setup.py @ 9:6610eedd9fae

Uploaded
author cshl-bsr
date Wed, 30 Mar 2016 12:11:46 -0400
parents dfa3745e5fd8
children
line wrap: on
line diff
--- a/ezBAMQC/setup.py	Wed Mar 30 12:03:10 2016 -0400
+++ b/ezBAMQC/setup.py	Wed Mar 30 12:11:46 2016 -0400
@@ -89,28 +89,28 @@
 	sys.exit()
 
 BAMQC_HEADER = [
-    'src/bamqc/Constants.h',
-    'src/bamqc/Coverage_prof.h',
-    'src/bamqc/GeneFeatures.h',
-    'src/bamqc/InnerDist_prof.h',
-    'src/bamqc/IntervalTree.h',
-    'src/bamqc/Mappability.h',
-    'src/bamqc/parseBAM.h',
-    'src/bamqc/ReadDup_prof.h',
-    'src/bamqc/Results.h',
-    'src/bamqc/rRNA.h'
+    'src/ezBAMQC/Constants.h',
+    'src/ezBAMQC/Coverage_prof.h',
+    'src/ezBAMQC/GeneFeatures.h',
+    'src/ezBAMQC/InnerDist_prof.h',
+    'src/ezBAMQC/IntervalTree.h',
+    'src/ezBAMQC/Mappability.h',
+    'src/ezBAMQC/parseBAM.h',
+    'src/ezBAMQC/ReadDup_prof.h',
+    'src/ezBAMQC/Results.h',
+    'src/ezBAMQC/rRNA.h'
 ]
 
 BAMQC_SOURCE = [
-    'src/bamqc/Coverage_prof.cpp',
-    'src/bamqc/GeneFeatures.cpp',
-    'src/bamqc/InnerDist_prof.cpp',
-    'src/bamqc/IntervalTree.cpp',
-    'src/bamqc/Mappability.cpp',
-    'src/bamqc/parseBAM.cpp',
-    'src/bamqc/ReadDup_prof.cpp',
-    'src/bamqc/Results.cpp',
-    'src/bamqc/rRNA.cpp'
+    'src/ezBAMQC/Coverage_prof.cpp',
+    'src/ezBAMQC/GeneFeatures.cpp',
+    'src/ezBAMQC/InnerDist_prof.cpp',
+    'src/ezBAMQC/IntervalTree.cpp',
+    'src/ezBAMQC/Mappability.cpp',
+    'src/ezBAMQC/parseBAM.cpp',
+    'src/ezBAMQC/ReadDup_prof.cpp',
+    'src/ezBAMQC/Results.cpp',
+    'src/ezBAMQC/rRNA.cpp'
 ]
 
 ###TODO HAVE TO SPLIT INTO TWO AND MAKE THE A FILE
@@ -174,7 +174,7 @@
 BAMqc_CFLAGS = ['-fpermissive','-O3','-std=c++11','-Wno-error=declaration-after-statement'] 
 BAMqc_DFLAGS = [('_FILE_OFFSET_BITS','64'),('_LARGEFILE64_SOURCE',''),('_CURSES_LIB','1')]
 BAMqc_INCLUDES = ['./src/htslib']
-BAMqc_HEADERS = ['./src/bamqc']
+BAMqc_HEADERS = ['./src/ezBAMQC']
 BAMqc_EXTRA = ['build/lib.linux-x86_64-2.7/htslib.so']
 
 htslib_CFLAGS = ['-Wno-error=declaration-after-statement']
@@ -182,7 +182,7 @@
 htslib_DFLAGS = [('_FILE_OFFSET_BITS','64'),('_USE_KNETFILE','')]
 
 setup(name = "ezBAMQC",
-    version = "0.6.5",
+    version = "0.6.7",
     description = 'Quality control tools for NGS alignment file',
     keywords = 'Quality control BAM file',
 	# make sure to add all the nessacary requires