diff ezBAMQC/test-data/output/data/smp1.res.txt @ 0:dfa3745e5fd8

Uploaded
author youngkim
date Thu, 24 Mar 2016 17:12:52 -0400
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ezBAMQC/test-data/output/data/smp1.res.txt	Thu Mar 24 17:12:52 2016 -0400
@@ -0,0 +1,49 @@
+filename	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/data/smp1.res.txt
+is_pairEnd	0
+clipping_plot_file	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp1.clipping_profile.png
+mapq_plot_file	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp1.mapq_profile.png
+mapq_file	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/data/smp1.mapq_profile.xls
+read_cov_plot_file	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp1.geneBodyCoverage.png
+trans_cov_plot_file	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp1.TransCoverage.png
+insert_plot_file	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp1.inner_distance_plot.png
+insert_file	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/data/smp1.inner_distance_freq.txt
+read_dist_plot_file1	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp1.read_distr.png
+read_dist_plot_file2	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp1.read_distr_pie.png
+readLen_plot_file	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp1.readlen_profile.png
+geneCount_file	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/data/smp1.geneAbundance.txt
+seqDeDup_percent	0.000000
+posDeDup_percent	0.000000
+no_clipping	0
+no_rRNA	0
+total_reads	79258
+uniq_mapped_reads	66672
+multi_mapped_reads	12586
+unmapped_reads	0
+low_qual	0
+low_qual_read1	0
+low_qual_read2	0
+pcr_dup	0
+rRNA_read	7563
+cds_read	24849
+utr5_read	1533
+utr3_read	16115
+intron_read	8729
+itgup1k_read	205
+itgdn1k_read	453
+itg_read	14335
+unmapped_read1	0
+unmapped_read2	0
+mapped_read1	0
+mapped_read2	0
+forward_read	33207
+reverse_read	33465
+paired_reads	0
+mapped_plus_minus	0
+mapped_plus_plus	0
+mapped_minus_plus	0
+mapped_minus_minus	0
+ins_read	0
+del_read	0
+noSplice	52213
+splice	14459
+paired_diff_chrom	0