diff ezBAMQC/test-data/output/data/smp2.res.txt @ 0:dfa3745e5fd8

Uploaded
author youngkim
date Thu, 24 Mar 2016 17:12:52 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ezBAMQC/test-data/output/data/smp2.res.txt	Thu Mar 24 17:12:52 2016 -0400
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+filename	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/data/smp2.res.txt
+is_pairEnd	0
+clipping_plot_file	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.clipping_profile.png
+mapq_plot_file	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.mapq_profile.png
+mapq_file	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/data/smp2.mapq_profile.xls
+read_cov_plot_file	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.geneBodyCoverage.png
+trans_cov_plot_file	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.TransCoverage.png
+insert_plot_file	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.inner_distance_plot.png
+insert_file	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/data/smp2.inner_distance_freq.txt
+read_dist_plot_file1	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.read_distr.png
+read_dist_plot_file2	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.read_distr_pie.png
+readLen_plot_file	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.readlen_profile.png
+geneCount_file	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/data/smp2.geneAbundance.txt
+seqDeDup_percent	0.000000
+posDeDup_percent	0.000000
+no_clipping	0
+no_rRNA	0
+total_reads	80603
+uniq_mapped_reads	69389
+multi_mapped_reads	11214
+unmapped_reads	0
+low_qual	0
+low_qual_read1	0
+low_qual_read2	0
+pcr_dup	0
+rRNA_read	5939
+cds_read	22143
+utr5_read	1293
+utr3_read	15499
+intron_read	7798
+itgup1k_read	156
+itgdn1k_read	511
+itg_read	21398
+unmapped_read1	0
+unmapped_read2	0
+mapped_read1	0
+mapped_read2	0
+forward_read	34065
+reverse_read	35324
+paired_reads	0
+mapped_plus_minus	0
+mapped_plus_plus	0
+mapped_minus_plus	0
+mapped_minus_minus	0
+ins_read	0
+del_read	0
+noSplice	56765
+splice	12624
+paired_diff_chrom	0