view ezBAMQC/test-data/output/data/smp0.res.txt @ 9:6610eedd9fae

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author cshl-bsr
date Wed, 30 Mar 2016 12:11:46 -0400
parents dfa3745e5fd8
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filename	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/data/smp0.res.txt
is_pairEnd	0
clipping_plot_file	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp0.clipping_profile.png
mapq_plot_file	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp0.mapq_profile.png
mapq_file	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/data/smp0.mapq_profile.xls
read_cov_plot_file	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp0.geneBodyCoverage.png
trans_cov_plot_file	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp0.TransCoverage.png
insert_plot_file	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp0.inner_distance_plot.png
insert_file	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/data/smp0.inner_distance_freq.txt
read_dist_plot_file1	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp0.read_distr.png
read_dist_plot_file2	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp0.read_distr_pie.png
readLen_plot_file	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp0.readlen_profile.png
geneCount_file	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/data/smp0.geneAbundance.txt
seqDeDup_percent	0.000000
posDeDup_percent	0.000000
no_clipping	0
no_rRNA	0
total_reads	77686
uniq_mapped_reads	64349
multi_mapped_reads	13337
unmapped_reads	0
low_qual	0
low_qual_read1	0
low_qual_read2	0
pcr_dup	0
rRNA_read	8521
cds_read	24065
utr5_read	1500
utr3_read	15884
intron_read	8486
itgup1k_read	169
itgdn1k_read	452
itg_read	13287
unmapped_read1	0
unmapped_read2	0
mapped_read1	0
mapped_read2	0
forward_read	31875
reverse_read	32474
paired_reads	0
mapped_plus_minus	0
mapped_plus_plus	0
mapped_minus_plus	0
mapped_minus_minus	0
ins_read	0
del_read	0
noSplice	50449
splice	13900
paired_diff_chrom	0