# HG changeset patch
# User cshl-bsr
# Date 1459280034 14400
# Node ID 0c5c414c3407e34704e9f571345ce8abbd5b64d3
# Parent  50a9d8992e6502f409b799873f146ea137134488
Uploaded

diff -r 50a9d8992e65 -r 0c5c414c3407 cshl_geneGTF.loc.sample
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/cshl_geneGTF.loc.sample	Tue Mar 29 15:33:54 2016 -0400
@@ -0,0 +1,20 @@
+##
+## Location of gene annotations GTF
+##
+## Format is:
+##  value<TAB>Name<TAB>dbkey<TAB>ID
+##
+##  Name can contain spaces
+
+/localdata1/annotations/GTF/latest/hg19_refGene.gtf	hg19 UCSC refSeq	hg19	hg19_refgene
+/localdata1/annotations/GTF/latest/hg18_refGene.gtf	hg18 UCSC refSeq	hg18	hg18_refgene
+/localdata1/annotations/GTF/latest/mm10_refGene.gtf	mm10 UCSC refSeq	mm10	mm10_refgene
+/localdata1/annotations/GTF/latest/mm9_refGene.gtf	mm9 UCSC refSeq	mm9	mm9_refgene
+/localdata1/annotations/GTF/latest/dm3_refGene.gtf	dm3 UCSC refSeq	dm3	dm3_refgene
+/localdata1/annotations/GTF/refseq_2015_01_20/rn5_refGene.gtf	rn5 UCSC refSeq	rn5	rn5_refgene
+#/localdata1/annotations/GTF/latest/rn4_refGene.gtf	rn4 UCSC refSeq	rn4	rn4_refgene
+#/localdata1/annotations/GTF/latest/ce6_refGene.gtf	ce6 UCSC refSeq	ce6	ce6_refgene
+#/localdata1/annotations/GTF/latest/ce10_refGene.gtf	ce10 UCSC refSeq	ce10	ce10_refgene
+#/localdata1/annotations/GTF/igenomes_2014_08_28/ZmAGPv2_iGenome_genes.gtf	Maize (AGPv2) iGenomes gene info	ZmAGPv2	ZmAGPv2_genes
+#/localdata1/annotations/GTF/igenomes_2014_08_28/ZmAGPv3_iGenome_genes.gtf	Maize (AGPv3) iGenomes gene info	ZmAGPv3	ZmAGPv3_genes
+#/localdata1/annotations/GTF/igenomes_2014_08_28/tair10_iGenome_genes.gtf	Arabidopsis (TAIR10) iGenomes gene info