# HG changeset patch
# User yufei-luo
# Date 1385719178 18000
# Node ID 8409cff2d740ba0aa9b3c6f482e8bb3769f4f8c9
# Parent  2c7b77f5919f447f5589dc460c8593ecb4cea48c
corrected the bug

diff -r 2c7b77f5919f -r 8409cff2d740 bwa_0_7_5/bwa_0_7_5.py
--- a/bwa_0_7_5/bwa_0_7_5.py	Mon Aug 12 08:53:36 2013 -0400
+++ b/bwa_0_7_5/bwa_0_7_5.py	Fri Nov 29 04:59:38 2013 -0500
@@ -225,7 +225,7 @@
     if args.genAlignType == 'paired':
         cmd = 'bwa mem %s %s %s %s %s > %s' % ( start_cmds, ref_file_name, fastq, rfastq, end_cmds, args.output )
     else:
-        cmd = 'bwa mem %s %s %s > %s' % ( start_cmds, ref_file_name, fastq, end_cmds, args.output )
+        cmd = 'bwa mem %s %s %s %s > %s' % ( start_cmds, ref_file_name, fastq, end_cmds, args.output )
 
   # perform alignments
     buffsize = 1048576