Mercurial > repos > yufei-luo > differential_expression_analysis_pipeline_for_rnaseq_data

diff DiffExpAnal/loadHTSeqResultFiles.xml @ 0:63799b789162 draft

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author yufei-luo
date Tue, 22 Jan 2013 10:07:03 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/DiffExpAnal/loadHTSeqResultFiles.xml	Tue Jan 22 10:07:03 2013 -0500
@@ -0,0 +1,29 @@
+<tool id="load_HTSeqResultFiles" name="load HTSeqResultFiles" >
+  <description>To load several HTSeq result files from different conditions.</description>
+  <command interpreter="python"> loadHTSeqResultFiles.py -o $htseqRes_out
+	-i
+	#for $i in $condition_groups
+	#for $j in $i.replicates
+	$j.tabular_file
+	#end for
+	@
+	#end for
+
+</command>
+  <inputs>
+	  <repeat name="condition_groups" title="Condition group" min="2">
+   	  <repeat name="replicates" title="Replicate">
+	    <param name="tabular_file" format="tabular" type="data" label="TABULAR file."/>
+          </repeat>
+     	  </repeat>
+  </inputs>
+
+  <outputs>
+    <data format="txt" name="htseqRes_out" label="HTSeq result files" help="This program gives you a list of files you choose for the following data analysis."/>
+
+</outputs>
+<help>
+</help>
+
+</tool>
+