Mercurial > repos > yufei-luo > differential_expression_analysis_pipeline_for_rnaseq_data
diff deseq/differential_expression_analysis_pipeline_for_rnaseq_data-a03838a6eb54/DiffExpAnal/countNumber.xml @ 10:6e573fd3c41b draft
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author | yufei-luo |
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date | Mon, 13 May 2013 10:06:30 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/deseq/differential_expression_analysis_pipeline_for_rnaseq_data-a03838a6eb54/DiffExpAnal/countNumber.xml Mon May 13 10:06:30 2013 -0400 @@ -0,0 +1,16 @@ +<tool id="countNumber" name="countNumber"> + <description>Calculate the number of reads(annotations) overlapping for each transcript.</description> + <command interpreter="perl"> countNumber.pl $input $outputCSV + </command> + + <inputs> + <param name="input" type="data" format="gff3" label="Please choose your gff3 format file (which contains the number of overlaps)."/> + </inputs> + + <outputs> + <data format="csv" name="outputCSV" label="countNumber Output"/> + </outputs> + + <help> + </help> +</tool>