Mercurial > repos > yufei-luo > differential_expression_analysis_pipeline_for_rnaseq_data

changeset 1:b8887c180d45 draft

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Uploaded
author yufei-luo
date Tue, 22 Jan 2013 10:31:35 -0500
parents 63799b789162
children 2d16b9c825e5
files DiffExpAnal/tophat_parallel.xml
diffstat 1 files changed, 0 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/DiffExpAnal/tophat_parallel.xml	Tue Jan 22 10:07:03 2013 -0500
+++ b/DiffExpAnal/tophat_parallel.xml	Tue Jan 22 10:31:35 2013 -0500
@@ -17,8 +17,6 @@
             ## Handle reference file.
             #if $refGenomeSource.genomeSource == "history":
                 --own-file=$refGenomeSource.ownFile
-            #else:
-                --indexes-path="${ filter( lambda x: str( x[0] ) == str( $refGenomeSource.index ), $__app__.tool_data_tables[ 'tophat_indexes' ].get_fields() )[0][-1] }"
             #end if
 
             ## Are reads single-end or paired?