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1 import unittest
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2 from commons.launcher.BlatClusterLauncher import BlatClusterLauncher
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3
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4
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5 class Test_BlatClusterLauncher( unittest.TestCase ):
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6
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7 def setUp( self ):
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8 self._i = BlatClusterLauncher()
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9
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10
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11 def tearDown( self ):
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12 self._i = None
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13
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14
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15 def test_getSpecificHelpAsString( self ):
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16 exp = ""
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17 exp += "\nspecific options:"
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18 exp += "\n -s: name of the subject file (format='fasta')"
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19 exp += "\n -p: parameters for 'blat'"
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20 exp += "\n -Z: concatenate output files"
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21 exp += "\n -A: same sequences (all-by-all)"
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22 obs = self._i.getSpecificHelpAsString()
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23 self.assertEqual( exp, obs )
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24
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25
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26 def test_setASpecificAttributeFromCmdLine( self ):
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27 self._i.setASpecificAttributeFromCmdLine( "-s", "dummySubjectFile.fa" )
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28 self.assertEqual( "dummySubjectFile.fa", self._i.getSubjectFile() )
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29
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30
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31 test_suite = unittest.TestSuite()
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32 test_suite.addTest( unittest.makeSuite( Test_BlatClusterLauncher ) )
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33 if __name__ == "__main__":
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34 unittest.TextTestRunner(verbosity=2).run( test_suite )
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