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1 import unittest
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2 import os
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3 from commons.core.utils.FileUtils import FileUtils
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4 from commons.launcher.LaunchLastZ import LaunchLastZ
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5
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6 class Test_F_LaunchLastZ(unittest.TestCase):
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7
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8 def setUp(self):
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9 self._inFastaFileName = "%s/Tools/input_TestFLastZ.fa" % os.environ["REPET_DATA"]
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10 self._expAxtFileName = "%s/Tools/exp_TestFLastZ.axt" % os.environ["REPET_DATA"]
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11 self._obsAxtFileName = "obsLastZ.axt"
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12
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13 def tearDown(self):
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14 try:
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15 os.remove(self._obsAxtFileName)
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16 except:pass
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17
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18 def test_run(self):
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19 ilauncher = LaunchLastZ(self._inFastaFileName, self._inFastaFileName, self._obsAxtFileName,verbosity=1)
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20 ilauncher.run()
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21 self.assertTrue(FileUtils.are2FilesIdentical(self._expAxtFileName, self._obsAxtFileName))
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22
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23 def test_run_as_script(self):
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24 #FIXME : change path
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25 cmd = 'python %s/commons/launcher/LaunchLastZ.py -q %s -r %s -o %s' % (os.environ["REPET_PATH"], self._inFastaFileName, self._inFastaFileName, self._obsAxtFileName)
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26 os.system(cmd)
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27 self.assertTrue(FileUtils.are2FilesIdentical(self._expAxtFileName, self._obsAxtFileName))
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28
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29
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30 if __name__ == "__main__":
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31 unittest.main() |
