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1 import os
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2 import unittest
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3 import commons.pyRepetUnit.hmmer.hmmOutput.HmmpfamOutputProcessing
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4 from commons.core.utils.FileUtils import FileUtils
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5
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6 class Test_F_Hmmerpfam2align(unittest.TestCase):
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7
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8 def setUp(self):
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9 self.hmmpfamOutputProcess = commons.pyRepetUnit.hmmer.hmmOutput.HmmpfamOutputProcessing.HmmpfamOutputProcessing()
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10 self._inputFile = "./datas/test_hmmpfam_output"
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11 self._outputFile = "./datas/PostProcessResult.align"
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12
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13 def testAcceptanceHmmpfam2align(self):
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14 self.hmmpfamOutputProcess.readHmmOutputsAndWriteAlignFile( self._inputFile, self._outputFile )
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15 self.assertTrue(FileUtils.isRessourceExists(self._outputFile))
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16 self.assertTrue(FileUtils.are2FilesIdentical(self._inputFile + ".align", self._outputFile))
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17 os.remove(self._outputFile)
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18
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19 if __name__ == "__main__":
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20 unittest.main() |
