Mercurial > repos > yufei-luo > s_mart

annotate commons/pyRepetUnit/hmmer/profilsSearchInTEClassifier/tests/datas/hmmbank_test @ 31:0ab839023fe4

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Uploaded
author m-zytnicki
date Tue, 30 Apr 2013 14:33:21 -0400
parents 94ab73e8a190
children
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18
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1 HMMER2.0 [2.3.2]
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2 NAME DUF234
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3 ACC PF03008.6
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4 DESC Archaea bacterial proteins of unknown function
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5 LENG 100
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6 ALPH Amino
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7 RF no
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8 CS no
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9 MAP yes
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10 COM hmmbuild -f -F HMM_fs.ann SEED.ann
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11 COM hmmcalibrate --seed 0 HMM_fs.ann
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12 NSEQ 19
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13 DATE Tue Apr 22 17:16:17 2008
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14 CKSUM 5535
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15 GA 15.0000 15.0000;
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16 TC 15.4000 15.4000;
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18 XT -8455 -4 -1000 -1000 -8455 -4 -8455 -4
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19 NULT -4 -8455
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21 EVD -8.994637 0.724738
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22 HMM A C D E F G H I K L M N P Q R S T V W Y
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23 m->m m->i m->d i->m i->i d->m d->d b->m m->e
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24 -138 * -3458
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m-zytnicki
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482 //
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483 HMMER2.0 [2.3.2]
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484 NAME CPW_WPC
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485 ACC PF09717.2
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486 DESC Plasmodium falciparum domain of unknown function (CPW_WPC)
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487 LENG 65
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488 ALPH Amino
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490 CS no
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491 MAP yes
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494 NSEQ 45
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m-zytnicki
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495 DATE Wed Apr 23 04:57:54 2008
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496 CKSUM 4547
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497 GA 20.0000 20.0000;
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parents:
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m-zytnicki
parents:
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m-zytnicki
parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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m-zytnicki
parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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1849 - -16 -7446 -8489 -894 -1115 -701 -1378 -8763 -8459
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m-zytnicki
parents:
diff changeset
1852 - -16 -7446 -8489 -894 -1115 -701 -1378 -8763 -8455
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parents:
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1855 - -17 -7447 -8490 -894 -1115 -701 -1378 -8763 -8452
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parents:
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m-zytnicki
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m-zytnicki
parents:
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1861 - -17 -7446 -8489 -894 -1115 -701 -1378 -8763 -8443
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parents:
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m-zytnicki
parents:
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1864 - -17 -7446 -8489 -894 -1115 -701 -1378 -8763 -8439
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m-zytnicki
parents:
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m-zytnicki
parents:
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1867 - -17 -7447 -8489 -894 -1115 -701 -1378 -8763 -8435
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m-zytnicki
parents:
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m-zytnicki
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1869 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
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m-zytnicki
parents:
diff changeset
1870 - -17 -7447 -8489 -894 -1115 -701 -1378 -8763 -8430
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m-zytnicki
parents:
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m-zytnicki
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m-zytnicki
parents:
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1873 - -17 -7447 -8489 -894 -1115 -701 -1378 -8763 -8426
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parents:
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m-zytnicki
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m-zytnicki
parents:
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1876 - -17 -7447 -8489 -894 -1115 -701 -1378 -8763 -8422
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m-zytnicki
parents:
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m-zytnicki
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m-zytnicki
parents:
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1879 - -17 -7447 -8489 -894 -1115 -701 -1378 -8763 -8418
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m-zytnicki
parents:
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m-zytnicki
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m-zytnicki
parents:
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1882 - -17 -7447 -8489 -894 -1115 -701 -1378 -8763 -8414
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m-zytnicki
parents:
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m-zytnicki
parents:
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m-zytnicki
parents:
diff changeset
1885 - -17 -7447 -8489 -894 -1115 -701 -1378 -8763 -8409
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m-zytnicki
parents:
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m-zytnicki
parents:
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m-zytnicki
parents:
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1888 - -17 -7447 -8489 -894 -1115 -701 -1378 -8763 -8405
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m-zytnicki
parents:
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m-zytnicki
parents:
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m-zytnicki
parents:
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parents:
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m-zytnicki
parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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diff changeset
1948 - -17 -7447 -8489 -894 -1115 -701 -1378 -8763 -8317
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1949 45 -2599 -2111 -4990 -4499 -977 -4682 -3672 2787 -4247 2206 211 -4362 -4164 -3494 -3981 -3989 -2519 -43 -2635 -2602 45
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1950 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1951 - -17 -7447 -8489 -894 -1115 -701 -1378 -8763 -8313
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1952 46 -2617 -2128 -5004 -4510 -962 -4697 -3673 2718 -4257 2271 226 -4377 -4168 -3489 -3983 -4004 -2535 -75 -2624 -2600 46
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1953 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1954 - -17 -7447 -8489 -894 -1115 -701 -1378 -8763 -8308
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1955 47 -3196 -3194 -3915 -4259 -4867 3789 -4005 -5414 -4591 -5241 -4823 -3935 -3840 -4374 -4341 -3455 -3585 -4634 -4094 -4784 47
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1956 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1957 - -17 -7447 -8489 -894 -1115 -701 -1378 -8763 -8304
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1958 48 -2079 -3848 3470 -179 -4127 -1931 -1383 -4171 -1728 -4041 -3438 2140 -2505 -1078 -2628 -1744 -2189 -3612 -4143 -3137 48
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1959 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1960 - -17 -7447 -8489 -894 -1115 -701 -1378 -8763 -8299
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1961 49 -3196 -3194 -3915 -4259 -4867 3789 -4005 -5414 -4591 -5241 -4823 -3935 -3840 -4374 -4341 -3455 -3585 -4634 -4094 -4784 49
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1962 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1963 - -17 -7447 -8489 -894 -1115 -701 -1378 -8763 -8295
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1964 50 -1576 -1928 -2263 -1702 -2345 -2542 -1315 -818 2634 -1787 -1337 -1682 -2730 -1020 -480 -1820 -1563 2406 -2561 -2198 50
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1965 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1966 - -17 -7447 -8489 -894 -1115 -701 -1378 -8763 -8290
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1967 51 -1680 -2119 -3327 -3541 -3740 -2348 -3223 -3396 -3447 -3750 -3249 -2849 -3039 -3332 -3347 -1934 3920 -2813 -3757 -3736 51
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1968 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1969 - -17 -7447 -8489 -894 -1115 -701 -1378 -8763 -8285
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1970 52 -3973 -3059 -4457 -4697 703 -4307 -752 -2990 -4191 -2378 -2423 -3085 -4232 -3178 -3688 -3641 -3861 -3124 5543 2996 52
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1971 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1972 - -17 -7447 -8489 -894 -1115 -701 -1378 -8763 -8281
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1973 53 -3572 -3491 -3930 -3374 -4367 -3463 -2544 -4583 -1435 -4243 -3795 -3226 -3764 -2331 4134 -3660 -3534 -4308 -3567 -3769 53
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1974 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1975 - -17 -7447 -8489 -894 -1115 -701 -1378 -8763 -8276
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1976 54 -3196 -3194 -3915 -4259 -4867 3789 -4005 -5414 -4591 -5241 -4823 -3935 -3840 -4374 -4341 -3455 -3585 -4634 -4094 -4784 54
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1977 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1978 - -17 -7447 -8489 -894 -1115 -701 -1378 -8763 -8271
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1979 55 -833 3188 -3134 -2712 3025 -2056 -1519 -594 -2363 -953 -434 -2048 -2426 -2021 -2248 -1278 1610 -483 -1411 -815 55
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1980 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1981 - -17 -7447 -8489 -894 -1115 -701 -1378 -8763 -8267
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1982 56 1106 -931 -3512 -2946 1920 -2901 -1897 1912 -2620 -501 -104 -2528 -2902 -2290 -2497 -2026 -1139 1885 -1728 -1366 56
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1983 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1984 - -17 -7447 -8489 -894 -1115 -701 -1378 -8763 -8262
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1985 57 1495 -1148 -2580 -2406 2115 2445 -1923 -1812 -2310 -2114 -1438 -1825 -2264 -2037 -2379 -957 -985 -1414 -2376 -1845 57
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1986 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1987 - -17 -7447 -8489 -894 -1115 -701 -1378 -8763 -8257
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1988 58 -3196 -3194 -3915 -4259 -4867 3789 -4005 -5414 -4591 -5241 -4823 -3935 -3840 -4374 -4341 -3455 -3585 -4634 -4094 -4784 58
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1989 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1990 - -17 -7447 -8489 -894 -1115 -701 -1378 -8763 -8253
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1991 59 -1504 -1183 -3893 -3365 -1292 -3380 -2473 2019 -3083 1148 -276 -3002 -3315 -2770 -2994 -2539 1457 1986 -2231 -1886 59
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1992 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1993 - -17 -7447 -8489 -894 -1115 -701 -1378 -8763 -8248
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1994 60 1194 -1011 -3487 -2883 1941 -2855 -1727 1800 -2530 1288 283 -2469 -2817 -2107 -2358 -1962 -1171 73 -1467 -1161 60
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1995 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1996 - -17 -7447 -8489 -894 -1115 -701 -1378 -8763 -8243
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1998 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1999 - -17 -7447 -8489 -894 -1115 -701 -1378 -8763 -8238
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2000 62 -3196 -3194 -3915 -4259 -4867 3789 -4005 -5414 -4591 -5241 -4823 -3935 -3840 -4374 -4341 -3455 -3585 -4634 -4094 -4784 62
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2001 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2002 - -17 -7447 -8489 -894 -1115 -701 -1378 -8763 -8234
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2004 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2005 - -17 -7447 -8489 -894 -1115 -701 -1378 -8763 -8229
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2007 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2008 - -17 -7447 -8489 -894 -1115 -701 -1378 -8763 -8224
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2009 65 -1715 -1349 -4176 -3741 -1806 -3749 -3189 2157 -3536 -891 -683 -3426 -3697 -3340 -3550 -2982 1582 2662 -2950 -2533 65
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2010 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2011 - -17 -7447 -8489 -894 -1115 -701 -1378 -8763 -8219
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2012 66 1719 -1371 -2868 -3097 -3735 3121 -2875 -3505 -3247 -3780 -2910 -2141 -2379 -2860 -3170 -1004 -1214 -2429 -3890 -3773 66
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2013 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2014 - -17 -7447 -8489 -894 -1115 -701 -1378 -8763 -8214
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2016 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2017 - -17 -7447 -8489 -894 -1115 -701 -1378 -8763 -8209
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2018 68 -2079 -1616 -4644 -4218 -1594 -4332 -3732 2788 -4058 1309 -392 -3983 -4060 -3705 -4013 -3613 -2046 2027 -3094 -2821 68
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2019 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2020 - -17 -7447 -8489 -894 -1115 -701 -1378 -8763 -8205
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2022 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2023 - -17 -7447 -8489 -894 -1115 -701 -1378 -8763 -8200
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2025 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2026 - -17 -7447 -8489 -894 -1115 -701 -1378 -8763 -8195
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2028 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2029 - -17 -7447 -8489 -894 -1115 -701 -1378 -8763 -8190
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2031 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2032 - -344 -7447 -2300 -894 -1115 -701 -1378 -8763 -8185
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2034 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2035 - -20 -7124 -8166 -894 -1115 -1436 -666 -8763 -8180
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2037 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2038 - -461 -7124 -1927 -894 -1115 -1436 -666 -8763 -8175
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2040 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2041 - -26 -6688 -7731 -894 -1115 -1935 -438 -8763 -8170
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2043 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2044 - -26 -6688 -7731 -894 -1115 -1935 -438 -8763 -8165
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2046 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2047 - -700 -6688 -1430 -894 -1115 -1935 -438 -8763 -8160
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2049 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2050 - -38 -6027 -7069 -894 -1115 -1203 -822 -8763 -8155
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2052 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2053 - -26 -6688 -7731 -894 -1115 -1935 -438 -8763 -8150
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2055 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2056 - -26 -6689 -7731 -894 -1115 -1935 -438 -8763 -8145
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2058 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2059 - -26 -6689 -7731 -894 -1115 -852 -1165 -8763 -8140
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2061 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2062 - -21 -7124 -8166 -894 -1115 -1436 -666 -8763 -8134
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2064 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2065 - -21 -7124 -8166 -894 -1115 -379 -2113 -8763 -8129
94ab73e8a190 Uploaded
m-zytnicki
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parents:
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parents:
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parents:
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diff changeset
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parents:
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parents:
diff changeset
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parents:
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parents:
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parents:
diff changeset
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parents:
diff changeset
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parents:
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parents:
diff changeset
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
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m-zytnicki
parents:
diff changeset
3226 - * * * * * * * * * * * * * * * * * * * *
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
3227 - * * * * * * * -9539 0
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
3228 //
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
3229 HMMER2.0 [2.3.2]
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
3230 NAME Amino_oxidase
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
3231 ACC PF01593.16
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
3232 DESC Flavin containing amine oxidoreductase
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
3233 LENG 482
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
3234 ALPH Amino
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
3235 RF no
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
3236 CS yes
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
3237 MAP yes
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
3238 COM hmmbuild -f -F HMM_fs.ann SEED.ann
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
3239 COM hmmcalibrate --seed 0 HMM_fs.ann
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
3240 NSEQ 86
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
3241 DATE Thu Jun 12 16:59:13 2008
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
3242 CKSUM 9581
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
3243 GA 14.7000 14.7000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
3244 TC 14.7000 14.7000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
3245 NC 14.6000 14.6000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
3246 XT -8455 -4 -1000 -1000 -8455 -4 -8455 -4
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
3247 NULT -4 -8455
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
3249 EVD -11.621656 0.638325
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
3250 HMM A C D E F G H I K L M N P Q R S T V W Y
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
3251 m->m m->i m->d i->m i->i d->m d->d b->m m->e
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
3252 -21 * -6109
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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parents:
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parents:
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parents:
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parents:
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parents:
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4697 - * * * * * * * * * * * * * * * * * * * *
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m-zytnicki
parents:
diff changeset
4698 H * * * * * * * -9931 0
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
4699 //
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
4700 HMMER2.0 [2.3.2]
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
4701 NAME TrbL
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
4702 ACC PF04610.6
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
4703 DESC TrbL/VirB6 plasmid conjugal transfer protein
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m-zytnicki
parents:
diff changeset
4704 LENG 285
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m-zytnicki
parents:
diff changeset
4705 ALPH Amino
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
4706 RF no
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
4707 CS no
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
4708 MAP yes
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
4709 COM hmmbuild -f -F HMM_fs.ann SEED.ann
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
4710 COM hmmcalibrate --seed 0 HMM_fs.ann
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
4711 NSEQ 37
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
4712 DATE Thu Apr 24 20:13:05 2008
94ab73e8a190 Uploaded
m-zytnicki
parents:
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4713 CKSUM 7909
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m-zytnicki
parents:
diff changeset
4714 GA 16.4000 16.4000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
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94ab73e8a190 Uploaded
m-zytnicki
parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
4718 NULT -4 -8455
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m-zytnicki
parents:
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m-zytnicki
parents:
diff changeset
4720 EVD -9.984805 0.666494
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m-zytnicki
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diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
5572 - -7 -10415 -11458 -894 -1115 -701 -1378 -9187 -8160
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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parents:
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
5578 - * * * * * * * -9187 0
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
5579 //
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
5580 HMMER2.0 [2.3.2]
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
5581 NAME TNV_CP
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
5582 ACC PF03898.5
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
5583 DESC Satellite tobacco necrosis virus coat protein
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
5584 LENG 204
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
5585 ALPH Amino
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
5586 RF no
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
5587 CS yes
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
5588 MAP yes
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
5589 COM hmmbuild -f -F HMM_fs.ann SEED.ann
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
5590 COM hmmcalibrate --seed 0 HMM_fs.ann
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
5591 NSEQ 3
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
5592 DATE Tue Apr 22 18:35:33 2008
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
5593 CKSUM 926
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
5594 GA 25.0000 25.0000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
5595 TC 341.6000 341.6000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
5596 NC 12.4000 12.4000;
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m-zytnicki
parents:
diff changeset
5597 XT -8455 -4 -1000 -1000 -8455 -4 -8455 -4
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
5598 NULT -4 -8455
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
5600 EVD -9.992213 0.710576
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m-zytnicki
parents:
diff changeset
5601 HMM A C D E F G H I K L M N P Q R S T V W Y
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
5602 m->m m->i m->d i->m i->i d->m d->d b->m m->e
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m-zytnicki
parents:
diff changeset
5603 -322 * -2322
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parents:
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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m-zytnicki
parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
5615 - -19 -7112 -8154 -894 -1115 -701 -1378 -8987 -8655
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
5617 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
5621 - -19 -7112 -8154 -894 -1115 -701 -1378 -8987 -8647
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
5623 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
5624 - -19 -7112 -8154 -894 -1115 -701 -1378 -8987 -8644
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m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
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m-zytnicki
parents:
diff changeset
5629 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
5630 . -24 -6703 -7745 -894 -1115 -384 -2097 -8987 -8637
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
5632 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
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m-zytnicki
parents:
diff changeset
5633 - -19 -7112 -8154 -894 -1115 -701 -1378 -8987 -8633
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m-zytnicki
parents:
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m-zytnicki
parents:
diff changeset
5635 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
5636 - -19 -7112 -8154 -894 -1115 -701 -1378 -8987 -8629
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m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
5639 - -19 -7112 -8154 -894 -1115 -701 -1378 -8987 -8626
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parents:
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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parents:
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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parents:
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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parents:
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
5675 T -19 -7112 -8154 -894 -1115 -701 -1378 -8987 -8581
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
5677 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
5678 T -19 -7112 -8154 -894 -1115 -701 -1378 -8987 -8577
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
5680 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
5684 - -19 -7112 -8154 -894 -1115 -701 -1378 -8987 -8570
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
5687 E -19 -7112 -8154 -894 -1115 -701 -1378 -8987 -8566
94ab73e8a190 Uploaded
m-zytnicki
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parents:
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parents:
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parents:
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parents:
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m-zytnicki
parents:
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m-zytnicki
parents:
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6216 //
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m-zytnicki
parents:
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parents:
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m-zytnicki
parents:
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parents:
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m-zytnicki
parents:
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m-zytnicki
parents:
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m-zytnicki
parents:
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m-zytnicki
parents:
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m-zytnicki
parents:
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m-zytnicki
parents:
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parents:
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parents:
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parents:
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parents:
diff changeset
6633 - -21 -7451 -8493 -894 -1115 -701 -1378 -8472 -7375
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6634 132 -605 -1200 -2730 -2748 -3134 3109 -2471 -2728 -2717 -3099 -2288 -1923 -2235 -2420 -2739 766 -1013 609 -3424 -3155 133
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6635 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6636 - -21 -7451 -8493 -894 -1115 -701 -1378 -8472 -7366
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6637 133 -924 -1748 -1180 -554 -2006 -1928 -511 -1576 1023 -1716 -952 -732 -2016 -151 1715 842 -849 1901 -2018 -1560 134
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6638 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6639 - -21 -7451 -8493 -894 -1115 -701 -1378 -8472 -7358
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6640 134 2157 -1264 -3503 -3362 -2251 -2205 -2790 -82 -3132 -1584 -1251 -2546 -2774 -2880 -3082 -1534 -1316 2739 -3066 -2717 135
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6641 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6642 - -21 -7451 -8493 -894 -1115 -701 -1378 -8472 -7349
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6643 135 -808 -1834 -996 -533 -2623 -1703 -703 -2295 2308 -2323 -1478 -710 -1969 -300 -452 1493 1520 -1838 -2512 -1982 136
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6644 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6645 - -21 -7451 -8493 -894 -1115 -701 -1378 -8472 -7340
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6646 136 1839 -1551 -1061 -692 -2641 362 -966 -2355 -675 -2441 -1573 -809 -1927 1741 -1105 1613 -775 -1795 -2684 -2134 137
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6647 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6648 - -21 -7451 -8493 -894 -1115 -701 -1378 -8472 -7331
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6649 137 441 -1256 -4053 -3549 -1434 -3563 -2727 2221 -3291 1189 -380 -3197 -3477 -2993 -3216 -2744 -1572 2168 -2452 -2097 138
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6650 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6651 - -21 -7451 -8493 -894 -1115 -701 -1378 -8472 -7322
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6652 138 -1064 -2565 1813 730 -2885 -1726 -542 -2636 -137 -2553 -1688 -347 -1952 1080 2619 -895 -1017 -2194 -2701 -2009 139
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6653 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6654 - -21 -7451 -8494 -894 -1115 -701 -1378 -8472 -7313
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6655 139 -2787 -2283 -4157 -4050 3531 -3824 -789 -1670 -3652 -1546 -1378 -2840 -3760 -2814 -3274 -3000 -2706 1219 -99 2805 140
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6656 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6657 - -22 -7452 -8495 -894 -1115 -701 -1378 -8472 -7305
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6658 140 -907 -827 -2618 -2034 -908 -2429 -1334 1870 -1679 -595 -57 -1842 -2483 -1519 1087 -1509 1432 1788 -1478 -1108 141
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6659 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6660 - -1119 -7452 -923 -894 -1115 -701 -1378 -8472 -7295
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6661 141 -1227 -2079 -1483 -563 -2720 -1889 -17 -2189 2627 -1967 -1253 -589 -1895 399 2295 -1127 -1010 -1921 -1905 -1674 142
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6662 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6663 - -36 -6368 -7410 -894 -1115 -218 -2835 -8472 -7285
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6664 142 -3569 -3390 -4042 -4362 -4763 -3426 -4034 -5349 -4542 -5126 -4838 -4133 4267 -4442 -4297 -3840 -3922 -4781 -4041 -4662 143
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6665 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6666 - -22 -7452 -8494 -894 -1115 -701 -1378 -8472 -7276
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6667 143 -897 1659 -3175 -2566 -535 -2472 -1343 191 -2184 903 235 -2099 -2501 -1813 -2016 -1571 -843 1968 3889 -790 144
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6668 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6669 - -22 -7452 -8494 -894 -1115 -701 -1378 -8472 -7267
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6670 144 -881 -1705 -725 2659 -2100 -1792 -821 -1205 -572 -1785 -1103 -711 -2048 -485 -1004 -934 825 1018 -2337 -1783 145
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6671 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6672 - -22 -7452 -8494 -894 -1115 -701 -1378 -8472 -7257
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6673 145 848 2412 -814 -282 -1840 -1581 -478 -1488 -179 -1638 -828 605 -1760 1276 -624 242 1658 -1176 -1983 -1435 146
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6674 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6675 - -22 -7452 -8494 -894 -1115 -701 -1378 -8472 -7248
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6676 146 823 -1126 -3541 -2944 -698 -2971 -1881 171 -2607 2021 2369 -2577 -2919 -2185 -2458 -2085 -1285 1112 -1614 -1359 147
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6677 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6678 - -22 -7452 -8494 -894 -1115 -701 -1378 -8472 -7238
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6679 147 -1152 -2711 1562 1292 -3021 859 -679 -2813 -492 -2751 -1896 -319 2083 -272 -1092 283 -1140 -2346 -2936 -2161 148
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6680 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6681 - -22 -7452 -8494 -894 -1115 -701 -1378 -8472 -7229
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6682 148 189 -1283 -881 -320 -1380 -1705 -404 -983 747 -1198 -444 -534 -1788 -106 661 -660 1808 289 -1622 1522 149
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6683 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6684 - -22 -7452 -8494 -894 -1115 -701 -1378 -8472 -7219
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6685 149 -577 -2004 1396 855 -2300 -1524 2067 -2038 187 -2009 -1102 -166 -1634 1067 -321 -462 1280 -82 -2200 -1525 150
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6686 - * * * * * * * * * * * * * * * * * * * *
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6687 - * * * * * * * -8472 0
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6688 //
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6689 HMMER2.0 [2.3.2]
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6690 NAME DUF1301
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6691 ACC PF06979.4
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6692 DESC Protein of unknown function (DUF1301)
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6693 LENG 145
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6694 ALPH Amino
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6695 RF no
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6696 CS no
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6697 MAP yes
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6698 COM hmmbuild -f -F HMM_fs.ann SEED.ann
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6699 COM hmmcalibrate --seed 0 HMM_fs.ann
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6700 NSEQ 8
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6701 DATE Tue Apr 22 21:57:56 2008
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6702 CKSUM 5186
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6703 GA 25.0000 25.0000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6704 TC 275.6000 275.6000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6705 NC 14.1000 14.1000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6706 XT -8455 -4 -1000 -1000 -8455 -4 -8455 -4
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6707 NULT -4 -8455
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6708 NULE 595 -1558 85 338 -294 453 -1158 197 249 902 -1085 -142 -21 -313 45 531 201 384 -1998 -644
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6709 EVD -10.124557 0.661501
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6710 HMM A C D E F G H I K L M N P Q R S T V W Y
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6711 m->m m->i m->d i->m i->i d->m d->d b->m m->e
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6712 -222 * -2808
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6713 1 458 -1085 -2557 -2091 -1296 2627 -1530 -735 -1835 377 1766 -1816 -2423 -1634 -1924 -1283 -982 -634 -1827 -1472 1
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6714 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6715 - -15 -7719 -8761 -894 -1115 -701 -1378 -1222 -8170
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6716 2 1128 -1566 -4013 -3923 -2565 -2672 -3382 -29 -3709 -1742 -1492 -3055 -3221 -3463 -3636 -2021 -1693 3308 -3555 -3188 2
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6717 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6718 - -15 -7719 -8761 -894 -1115 -701 -1378 -8392 -8165
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6719 3 -2768 -3358 -3517 -2082 -4283 -3215 -1090 -3581 3548 -3200 -2554 -1926 -3157 -675 1605 -2646 -2424 -3367 -3000 -2948 3
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6720 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6721 - -15 -7719 -8761 -894 -1115 -701 -1378 -8392 -8160
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6722 4 -1385 2974 -3780 -3192 2035 -3094 -2042 1678 -2840 672 -118 -2739 -3069 -2456 -2666 -2214 -1332 1633 -1809 -1484 4
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6723 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6724 - -15 -7719 -8761 -894 -1115 -701 -1378 -8392 -8155
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6725 5 -3471 -2881 -5046 -4890 3959 -4750 -2008 -1042 -4543 1248 -434 -3983 -4410 -3530 -4086 -4096 -3369 -1678 -1191 -197 5
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6726 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6727 - -15 -7719 -8761 -894 -1115 -701 -1378 -8392 -8150
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6728 6 -1644 -2173 -3321 -3615 -4077 -2357 -3411 -4307 -3792 -4459 -3725 -2859 -3095 -3512 -3692 3619 -2088 -3285 -4091 -3959 6
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6729 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6730 - -15 -7719 -8761 -894 -1115 -701 -1378 -8392 -8145
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6731 7 -3351 -2810 -4588 -4497 67 -4377 -1480 -1529 -4018 2252 -967 -3478 -4227 -3269 -3670 -3677 -3266 -1991 -755 3645 7
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6732 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6733 - -15 -7719 -8761 -894 -1115 -701 -1378 -8392 -8140
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6734 8 1459 -1468 -3324 -3507 -3903 -1728 -3101 -3677 -3478 -3955 -3050 -2337 -2512 -3087 -3362 3205 -1305 -2550 -4127 -3966 8
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6735 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6736 - -15 -7719 -8761 -894 -1115 -701 -1378 -8392 -8134
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6737 9 -878 -1493 -3146 -3292 -3762 -1753 -2970 -3504 -3238 -3799 -2935 -2284 -2521 -2935 -3178 1361 3530 -2490 -3997 -3786 9
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6738 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6739 - -15 -7719 -8761 -894 -1115 -701 -1378 -8392 -8129
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6740 10 -1644 -2173 -3321 -3615 -4077 -2357 -3411 -4307 -3792 -4459 -3725 -2859 -3095 -3512 -3692 3619 -2088 -3285 -4091 -3959 10
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6741 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6742 - -15 -7719 -8761 -894 -1115 -701 -1378 -8392 -8124
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6743 11 -1530 -1248 -3897 -3347 -1303 378 -2350 1933 -3033 1482 -341 -2945 -3282 -2701 -2914 -2451 -1488 2057 -2139 -1798 11
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6744 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6745 - -15 -7719 -8761 -894 -1115 -701 -1378 -8392 -8119
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6746 12 1889 -734 -2866 -2275 1174 847 -1278 952 -1951 -583 32 -1907 -2413 -1642 -1880 -1414 -796 902 -1262 -908 12
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6747 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6748 - -15 -7719 -8761 -894 -1115 -701 -1378 -8392 -8114
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6749 13 -1044 -1786 -1596 -1793 -3847 2868 -2302 -3677 -2431 -3818 -2949 1311 -2491 -2076 -2758 1586 -1423 -2689 -3981 -3548 13
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6750 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6751 - -15 -7719 -8761 -894 -1115 -701 -1378 -8392 -8109
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6752 14 910 -1456 -4181 -3644 -1358 -3634 -2703 1933 -3353 1972 -317 -3275 -3544 -2979 -3228 -2796 -1735 1219 -2383 -2086 14
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6753 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6754 - -15 -7719 -8761 -894 -1115 -701 -1378 -8392 -8103
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6755 15 1098 -746 -3124 -2513 1186 -2470 -1376 60 -2153 567 73 -2079 -2519 -1809 -2016 -1561 621 2115 -1275 -929 15
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6756 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6757 - -16 -7719 -8761 -894 -1115 -701 -1378 -8392 -8098
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6758 16 1546 -1027 -3445 -2837 1844 -2797 -1677 1215 -2477 -188 3143 -2411 -2798 -2081 -2317 -1897 -1160 -106 -1476 -1152 16
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6759 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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7111 - -20 -7724 -8766 -894 -1115 -701 -1378 -8392 -7286
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7112 134 -2663 -3085 -3193 -2812 -4279 -3085 -2316 -4200 -1272 -4020 -3407 -2679 3609 -2035 2417 -2760 -2783 -3732 -3662 -3655 134
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7113 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7114 - -20 -7723 -8765 -894 -1115 -701 -1378 -8392 -7276
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7115 135 -819 -2290 -425 1815 -2600 -1703 1862 -2351 -30 -2299 -1391 1490 -1841 1343 -538 -689 1208 -1909 -2473 -1783 135
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7116 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7117 - -20 -7723 -8765 -894 -1115 -701 -1378 -8392 -7267
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7118 136 1019 -3133 2805 -358 -3498 -2004 3376 -3409 -1265 -3384 -2621 -708 -2452 -909 -1916 -1506 -1762 -2930 -3540 -2713 136
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7119 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7120 - -20 -7723 -8765 -894 -1115 -701 -1378 -8392 -7257
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7121 137 -4444 -3646 -4593 -4892 -509 -4268 -1873 -3993 -4663 -3407 -3460 -3884 -4503 -3998 -4255 -4336 -4491 -4072 -1177 4829 137
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7122 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7123 - -20 -7723 -8765 -894 -1115 -701 -1378 -8392 -7248
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7125 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7126 - -20 -7723 -8765 -894 -1115 -701 -1378 -8392 -7238
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7128 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7129 - -20 -7723 -8765 -894 -1115 -701 -1378 -8392 -7229
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7130 140 -1866 -1668 -3692 -3059 -1111 -3459 -2239 2198 1169 2055 -68 -2864 -3355 -2290 -2237 -2601 -1793 -244 -2149 -1909 140
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7131 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7132 - -20 -7723 -8765 -894 -1115 -701 -1378 -8392 -7219
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7133 141 -3190 -2706 -5360 -4846 -958 -5018 -3789 -409 -4445 1484 4660 -4753 -4413 -3581 -4084 -4376 -3081 -1121 -2640 -2651 141
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7134 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7135 - -20 -7723 -8765 -894 -1115 -701 -1378 -8392 -7209
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7137 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7138 - -20 -7723 -8765 -894 -1115 -701 -1378 -8392 -7200
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7139 143 -4356 -3341 -4796 -5119 2367 -4668 -930 -3246 -4685 -2582 -2665 -3328 -4542 -3457 -4078 -3932 -4222 -3409 -179 4452 143
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7140 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7141 - -20 -7723 -8766 -894 -1115 -701 -1378 -8392 -7190
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7142 144 -3832 -4189 4132 -2236 -5073 -3341 -3194 -5633 -3716 -5365 -5035 -2584 -3886 -3102 -4252 -3662 -4000 -5151 -4434 -4544 144
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7143 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7144 - -20 -7723 -8766 -894 -1115 -701 -1378 -8392 -7180
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7145 145 -2233 -3610 1743 -725 -4063 -2369 -1472 -3904 3388 -3751 -3052 -1058 -2787 -1120 -1439 -1991 -2239 -3461 -3728 -3115 145
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7146 - * * * * * * * * * * * * * * * * * * * *
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7147 - * * * * * * * -8392 0
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7148 //
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7149 HMMER2.0 [2.3.2]
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7150 NAME Toxin_18
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7151 ACC PF08087.3
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7152 DESC Conotoxin O-superfamily
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7153 LENG 55
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7154 ALPH Amino
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7155 RF no
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7156 CS no
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7157 MAP yes
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7158 COM hmmbuild -f -F HMM_fs.ann SEED.ann
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7159 COM hmmcalibrate --seed 0 HMM_fs.ann
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7160 NSEQ 7
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7161 DATE Tue Apr 22 23:21:53 2008
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7162 CKSUM 1977
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7163 GA 14.7000 14.7000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7164 TC 15.9000 15.9000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7165 NC 14.6000 14.6000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7166 XT -8455 -4 -1000 -1000 -8455 -4 -8455 -4
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7167 NULT -4 -8455
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7168 NULE 595 -1558 85 338 -294 453 -1158 197 249 902 -1085 -142 -21 -313 45 531 201 384 -1998 -644
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7169 EVD -8.941043 0.590357
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7170 HMM A C D E F G H I K L M N P Q R S T V W Y
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7171 m->m m->i m->d i->m i->i d->m d->d b->m m->e
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7172 -322 * -2322
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7173 1 -2406 -2296 -3638 -3594 -1525 -3105 -2824 -1047 -3121 -596 5043 -3293 -3425 -3046 -2996 -2911 -2552 -1398 -2513 -2207 1
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m-zytnicki
parents:
diff changeset
7174 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7175 - -29 -7121 -8163 -894 -1115 -701 -1378 -1322 -6755
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7176 2 -420 -1753 -291 241 629 -14 2245 -1736 998 -1744 -859 1197 -1496 1224 -132 -325 -358 -1349 -1959 -1313 2
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7177 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7178 - -29 -7121 -8164 -894 -1115 -701 -1378 -7077 -6741
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7179 3 -481 -336 -2608 -1990 1071 -2009 -854 1552 -1630 558 507 -1579 -2054 -1290 800 -1086 -421 991 -765 1446 3
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7180 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7181 - -29 -7122 -8164 -894 -1115 -701 -1378 -7077 -6728
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7182 4 -845 -1836 -818 -303 -1798 -1748 -330 -1805 2652 -1836 -1061 -507 -1868 22 54 463 -778 -1508 -1854 1576 4
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7183 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7184 - -29 -7122 -8164 -894 -1115 -701 -1378 -7077 -6714
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7185 5 963 -923 -2237 -2029 -2777 -1203 -1870 -2440 -1918 -2704 -1860 -1449 -1883 -1706 -2082 2221 2431 -1665 -3006 -2696 5
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7186 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7187 - -30 -7123 -8165 -894 -1115 -701 -1378 -7077 -6701
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7188 6 460 -661 -2708 -2174 -853 -2243 -1399 2283 -1902 -506 11 -1862 -2381 -1646 -1910 639 -743 1744 -1462 -1095 6
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7189 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7190 - -30 -7122 -8164 -894 -1115 -701 -1378 -7077 -6687
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7191 7 -1366 -1240 -2973 -2381 1523 -2814 -1351 -94 -1809 2261 408 -2161 -2748 -1662 1081 -1921 -1290 -379 -1141 -583 7
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7192 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7193 - -30 -7122 -8164 -894 -1115 -701 -1378 -7077 -6672
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7194 8 -1030 2502 -3316 -2712 1150 -2654 -1528 383 -2353 1931 489 -2281 -2617 -1921 -2169 -1764 -970 1248 -1256 -944 8
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7195 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7196 - -30 -7122 -8164 -894 -1115 -701 -1378 -7077 -6658
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7197 9 1272 -771 -3149 -2549 1152 -2584 -1461 1752 -2211 1387 469 -2170 -2558 -1816 -2072 -1685 -915 309 -1248 -940 9
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7198 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7199 - -30 -7122 -8165 -894 -1115 -701 -1378 -7077 -6644
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7200 10 730 -542 -2848 -2250 1920 -2274 -1179 417 -1910 -62 1861 -1859 -2308 -1569 -1799 -1368 -656 1971 -1067 -718 10
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7201 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7202 - -30 -7123 -8165 -894 -1115 -701 -1378 -7077 -6629
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7203 11 1485 2016 -2987 -2397 -606 -2387 -1335 1353 -2059 759 239 -1989 -2417 -1733 -1945 -1490 -711 1432 -1228 -876 11
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7204 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7205 - -30 -7123 -8165 -894 -1115 -701 -1378 -7077 -6615
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7206 12 631 -401 -2165 -1571 -380 -1918 -774 174 -1293 471 1760 -1347 345 -1033 -1318 -977 685 1595 -872 -512 12
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7207 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7208 - -31 -7124 -8166 -894 -1115 -701 -1378 -7077 -6601
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7209 13 970 -695 -1828 -1353 2330 -1515 -985 -668 -1171 -992 -302 -1163 -1867 -985 -1358 776 1551 -460 -1506 -1108 13
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7210 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7211 - -449 -7123 -2001 -894 -1115 -701 -1378 -7077 -6585
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7212 14 2240 -660 -2372 -2102 -1463 -1509 -1685 228 -1888 -945 -530 -1597 -2023 -1701 -1963 -793 -613 2045 -2127 -1759 14
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7213 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7214 - -36 -6710 -7752 -894 -1115 -1425 -672 -7077 -6570
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7215 15 2756 -617 -1853 -1799 -2514 -886 -1664 -2159 -1767 -2468 -1649 -1174 -1591 -1539 -1882 1459 -383 -1376 -2764 -2456 15
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7216 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7217 - -36 -6710 -7753 -894 -1115 -1425 -672 -7077 -6555
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7218 16 631 -711 -2760 -2239 -583 -2386 -1511 774 -1953 1830 393 -1976 -2454 -1681 -1956 -1531 -827 1644 -1457 -1141 16
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7219 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7220 - -36 -6711 -7753 -894 -1115 -382 -2102 -7077 -6539
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7221 17 478 -789 -1139 -599 1161 -1646 -464 -423 -456 324 -11 1905 -1756 -334 -771 387 -376 -274 -1205 -755 17
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7222 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7223 - -31 -7124 -8166 -894 -1115 -701 -1378 -7077 -6524
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7224 18 3007 -956 -2782 -2665 -2211 -1517 -2209 -781 -2448 -1772 -1312 -1875 -2169 -2220 -2451 -847 -860 959 -2793 -2467 18
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7225 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7226 - -32 -7125 -8167 -894 -1115 -701 -1378 -7077 -6509
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7227 19 -578 -1790 -300 109 -1881 -1490 -200 -1739 184 -1779 -942 988 802 2585 -262 -498 -525 -1394 -1936 1223 19
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7228 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7229 - -231 -7124 -2948 -894 -1115 -701 -1378 -7077 -6492
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7230 20 -1376 -1849 -1607 -1053 138 -2279 3192 -1670 -181 -1596 -1063 -1056 -2327 -509 1185 -1372 -1272 -1526 -432 3135 20
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7231 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7232 - -219 -6927 -3043 -894 -1115 -1117 -892 -7077 -6476
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7233 21 997 2943 -2230 -1806 -1003 713 -1150 -312 -1550 -850 -192 -1290 -1729 -1290 -1583 -496 -315 1779 -1465 -1123 21
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7234 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7235 - -37 -6745 -7787 -894 -1115 -395 -2061 -7077 -6459
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7236 22 2385 -1131 -2664 -2367 -1174 -2045 -1841 -318 -2075 1652 -255 -1981 -2449 -1894 -2112 -1323 -1086 -365 -2026 -1688 22
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7237 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7238 - -32 -7125 -8167 -894 -1115 -701 -1378 -7077 -6443
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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diff changeset
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diff changeset
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diff changeset
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diff changeset
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parents:
diff changeset
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diff changeset
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diff changeset
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diff changeset
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diff changeset
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diff changeset
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parents:
diff changeset
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diff changeset
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diff changeset
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parents:
diff changeset
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diff changeset
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parents:
diff changeset
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diff changeset
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diff changeset
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parents:
diff changeset
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diff changeset
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parents:
diff changeset
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diff changeset
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parents:
diff changeset
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parents:
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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m-zytnicki
parents:
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m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
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parents:
diff changeset
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parents:
diff changeset
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
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parents:
diff changeset
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parents:
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7337 - * * * * * * * -7077 0
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7338 //
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7339 HMMER2.0 [2.3.2]
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7340 NAME ABC_transp_aux
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7341 ACC PF09822.1
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
7343 LENG 287
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7344 ALPH Amino
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7345 RF no
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7346 CS no
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7347 MAP yes
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7348 COM hmmbuild -f -F HMM_fs.ann SEED.ann
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7349 COM hmmcalibrate --seed 0 HMM_fs.ann
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7350 NSEQ 56
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7351 DATE Wed Apr 23 02:18:46 2008
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7352 CKSUM 6761
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7353 GA 19.1000 19.1000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7354 TC 19.1000 19.1000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7357 NULT -4 -8455
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
7359 EVD -10.555989 0.649819
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7360 HMM A C D E F G H I K L M N P Q R S T V W Y
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7361 m->m m->i m->d i->m i->i d->m d->d b->m m->e
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7362 -28 * -5700
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8200 280 -3704 -3503 -6047 -5416 1542 -5275 -4115 1685 -5020 1934 -20 -4919 -346 -4588 -4802 -4369 -3639 830 600 1852 397
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8201 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8202 - -6 -10841 -11884 -894 -1115 -701 -1378 -9188 -8195
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8203 281 -1518 -4404 2134 506 -4724 -325 -2565 -4475 -498 381 -3493 2316 -3999 -595 -92 -2813 295 -905 -4588 -3905 398
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8204 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8205 - -6 -10841 -11884 -894 -1115 -701 -1378 -9188 -8190
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8206 282 -757 -4404 1336 -69 -4725 -1692 -10 -4476 793 -1881 -3493 1536 2394 -569 -369 -612 -126 -4026 -4587 -635 399
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8207 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8208 - -6 -10841 -11884 -894 -1115 -701 -1378 -9188 -8185
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8209 283 -1905 -4413 2199 -514 -4734 1478 -136 -4485 -723 -4429 -3502 1587 -4004 534 1394 -1367 196 -4035 -4596 -3913 400
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8210 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8211 - -6 -10841 -11884 -894 -1115 -701 -1378 -9188 -8180
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8212 284 -184 -3129 -1648 -1148 -3098 -4623 -3453 913 -1 1680 1296 -4021 468 -1081 -3991 -984 241 812 484 -518 401
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8213 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8214 - -6 -10842 -11884 -894 -1115 -701 -1378 -9188 -8175
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8215 285 355 -4539 -7720 -7392 -5221 -7506 -7458 1844 -7340 -534 -3930 -7180 -59 -7278 -7485 -6863 -5029 3145 -6893 -6383 402
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8216 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8217 - -6 -10842 -11884 -894 -1115 -701 -1378 -9188 -8170
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8218 286 414 -3060 -5257 -1603 -527 -1497 -3560 1669 -150 1212 1354 -464 -4757 -3967 -437 -746 -3129 1452 -3513 -3164 403
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8219 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8220 - -6 -10842 -11884 -894 -1115 -701 -1378 -9188 -8165
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8221 287 -565 -4735 3522 40 -5034 -426 -2872 -4785 -2512 -2377 -386 756 -4278 319 -3037 -3133 -3214 -1842 -4926 -4229 404
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8222 - * * * * * * * * * * * * * * * * * * * *
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8223 - * * * * * * * -9188 0
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8224 //
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8225 HMMER2.0 [2.3.2]
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8226 NAME DUF1602
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8227 ACC PF07673.6
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8228 DESC Protein of unknown function (DUF1602)
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8229 LENG 39
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8230 ALPH Amino
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8231 RF no
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8232 CS no
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8233 MAP yes
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8234 COM hmmbuild -f -F HMM_fs.ann SEED.ann
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8235 COM hmmcalibrate --seed 0 HMM_fs.ann
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8236 NSEQ 4
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8237 DATE Tue Apr 22 22:48:23 2008
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8238 CKSUM 9246
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8239 GA 15.0000 15.0000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8240 TC 15.0000 15.0000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8241 NC 14.9000 14.9000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8242 XT -8455 -4 -1000 -1000 -8455 -4 -8455 -4
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8243 NULT -4 -8455
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8244 NULE 595 -1558 85 338 -294 453 -1158 197 249 902 -1085 -142 -21 -313 45 531 201 384 -1998 -644
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8245 EVD -7.011845 0.849240
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8246 HMM A C D E F G H I K L M N P Q R S T V W Y
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8247 m->m m->i m->d i->m i->i d->m d->d b->m m->e
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8248 -263 * -2585
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8249 1 -3196 -3194 -3915 -4259 -4867 3789 -4005 -5414 -4591 -5241 -4823 -3935 -3840 -4374 -4341 -3455 -3585 -4634 -4094 -4784 1
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8250 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8251 - -31 -7461 -8503 -894 -1115 -701 -1378 -1263 -6248
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8252 2 -1298 -1844 -2875 -3136 -3678 -2026 -2995 -3857 -3302 -4033 -3306 -2458 -2758 -3055 -3253 3563 -1733 -2892 -3744 -3541 2
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8253 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8254 - -32 -7462 -8505 -894 -1115 -701 -1378 -6511 -6230
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8255 3 -1298 -1844 -2875 -3136 -3678 -2026 -2995 -3857 -3302 -4033 -3306 -2458 -2758 -3055 -3253 3563 -1733 -2892 -3744 -3541 3
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8256 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8257 - -32 -7462 -8504 -894 -1115 -701 -1378 -6511 -6209
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8258 4 -3572 -3491 -3930 -3374 -4367 -3463 -2544 -4583 -1435 -4243 -3795 -3226 -3764 -2331 4134 -3660 -3534 -4308 -3567 -3769 4
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8259 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8260 - -32 -7462 -8504 -894 -1115 -701 -1378 -6511 -6190
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8261 5 -692 -1493 -1334 -1183 -3008 -1540 -1484 -2745 -1317 -2878 -2020 2159 -2094 -1171 -1689 2336 1614 -2042 -3109 -2619 5
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8262 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8263 - -33 -7463 -8505 -894 -1115 -701 -1378 -6511 -6171
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8264 6 -1004 -1671 -1562 -938 -2039 -1988 -754 -1638 -48 -1764 2753 -1017 -2166 -436 2624 1109 -992 -1402 -2111 -1691 6
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8265 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8266 - -33 -7463 -8505 -894 -1115 -701 -1378 -6511 -6150
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8267 7 -764 -618 -2850 -2241 -489 -2299 -1151 1733 -1888 -249 2771 -1857 -2338 -1559 -1781 -1380 1302 142 -1062 1981 7
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8268 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8269 - -33 -7463 -8505 -894 -1115 -701 -1378 -6511 -6129
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8270 8 -698 -1238 -2248 -2069 2002 1593 -1770 -2087 -2044 -2327 -1610 -1664 -2237 -1811 -2214 2394 -998 -1614 -2352 -1712 8
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8271 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8272 - -33 -7463 -8505 -894 -1115 -701 -1378 -6511 -6109
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8273 9 -3196 -3194 -3915 -4259 -4867 3789 -4005 -5414 -4591 -5241 -4823 -3935 -3840 -4374 -4341 -3455 -3585 -4634 -4094 -4784 9
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8274 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8275 - -34 -7464 -8507 -894 -1115 -701 -1378 -6511 -6088
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8276 10 -1238 -1636 -2820 -2774 2197 -2132 -1592 -2183 -2686 -2210 -1794 -2149 -2701 -2365 -2699 3021 -1538 -1887 -1376 -368 10
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8277 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8278 - -34 -7464 -8506 -894 -1115 -701 -1378 -6511 -6066
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8279 11 -1510 3294 -3891 -3350 -1077 -3269 -2356 2563 -3024 -225 2913 -2948 -3229 -2652 -2888 -2432 -1477 494 -2059 -1757 11
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8280 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8281 - -34 -7464 -8506 -894 -1115 -701 -1378 -6511 -6044
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8282 12 2167 -1012 -2843 -2436 -1539 -2061 -1847 1924 -2187 -1165 -654 -1998 -2463 -1963 -2238 -1286 1507 -57 -2126 -1771 12
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8283 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8284 - -35 -7465 -8507 -894 -1115 -701 -1378 -6511 -6023
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8285 13 -1615 -2636 -1767 -963 -3274 -2366 -628 -2794 2640 -2591 -1823 -1063 -2404 -200 1937 1369 -1452 -2465 -2565 -2248 13
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8286 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8287 - -35 -7465 -8507 -894 -1115 -701 -1378 -6511 -6000
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8288 14 1941 -1516 -813 1538 -1778 -1737 -690 -1293 -455 -1524 2398 -675 -1951 -382 -859 -824 -758 -1073 -2031 -1516 14
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8289 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8290 - -35 -7465 -8507 -894 -1115 -701 -1378 -6511 -5977
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8291 15 -1213 -2206 -1336 -636 -2476 -2113 2560 -2130 378 564 -1330 -808 -2156 2178 1957 -1154 -1087 -1852 -2237 -1788 15
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8292 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8293 - -36 -7466 -8509 -894 -1115 -701 -1378 -6511 -5955
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8294 16 3527 -1872 -3386 -3637 -3817 -2114 -3249 -3478 -3634 -3846 -3228 -2714 -2847 -3362 -3481 -1630 -1813 -2725 -3849 -3859 16
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8295 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8296 - -36 -7466 -8508 -894 -1115 -701 -1378 -6511 -5931
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8297 17 -667 -843 -1749 -1162 -850 -1986 -778 1356 -807 -666 2632 -1159 -2066 -757 1305 1164 -614 -242 -1280 -888 17
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8298 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8299 - -37 -7467 -8509 -894 -1115 -701 -1378 -6511 -5908
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8300 18 2998 -1381 -2810 -2933 -3514 -1634 -2711 -3206 -2949 -3502 -2695 -2094 2147 -2665 -2937 -1021 -1210 -2300 -3704 -3525 18
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8301 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8302 - -37 -7467 -8509 -894 -1115 -701 -1378 -6511 -5883
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8303 19 -623 -1248 -2702 -2740 -3382 -1504 -2522 -3100 -2684 -3384 -2531 -1926 -2246 -2431 -2719 2516 2784 -2166 -3612 -3355 19
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8304 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8305 - -37 -7467 -8509 -894 -1115 -701 -1378 -6511 -5858
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8306 20 -2195 -2402 -3151 -2253 -1867 -3031 -1435 -1487 -384 1908 -946 -2130 -3077 -1170 3002 -2409 -2076 -1725 -2376 -2060 20
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8307 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8308 - -38 -7468 -8511 -894 -1115 -701 -1378 -6511 -5834
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8309 21 -3104 5787 -4601 -4904 -4350 -3261 -4077 -4355 -4778 -4582 -4307 -4213 -3851 -4624 -4385 -3422 -3495 -3939 -3935 -4341 21
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8310 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8311 - -38 -7468 -8510 -894 -1115 -701 -1378 -6511 -5807
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8312 22 -1765 4169 -3959 -3432 2029 -3307 -1880 -184 -3068 1544 178 -2924 -3234 -2515 -2837 -2465 -1715 -467 -1366 -749 22
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8313 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8314 - -39 -7469 -8511 -894 -1115 -701 -1378 -6511 -5782
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8315 23 -637 2727 -1332 -770 -1296 -1795 -671 -863 1543 -1130 2613 -872 -1948 -466 -750 1008 -622 -683 -1609 -1171 23
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8316 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8317 - -39 -7469 -8511 -894 -1115 -701 -1378 -6511 -5755
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8319 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8320 - -40 -7470 -8512 -894 -1115 -701 -1378 -6511 -5729
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8321 25 -1565 -2307 -1172 -1425 -3626 -2063 -2066 -3740 -2074 -3796 -3089 2356 3523 -1860 -2409 -1635 -1866 -3006 -3626 -3171 25
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8322 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8323 - -40 -7470 -8512 -894 -1115 -701 -1378 -6511 -5700
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8324 26 -1101 -1897 -564 1655 -2077 1369 -914 -1672 -747 1589 -1178 -742 -2160 -626 -1165 -1126 -1112 -1468 -2343 -1803 26
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8325 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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diff changeset
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diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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diff changeset
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diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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diff changeset
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diff changeset
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diff changeset
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parents:
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parents:
diff changeset
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parents:
diff changeset
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parents:
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parents:
diff changeset
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parents:
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parents:
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parents:
diff changeset
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parents:
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parents:
diff changeset
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parents:
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parents:
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parents:
diff changeset
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parents:
diff changeset
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
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parents:
diff changeset
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m-zytnicki
parents:
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
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m-zytnicki
parents:
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
8372 ALPH Amino
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m-zytnicki
parents:
diff changeset
8373 RF no
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8379 DATE Tue Apr 22 18:49:02 2008
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
8388 HMM A C D E F G H I K L M N P Q R S T V W Y
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
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parents:
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
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parents:
diff changeset
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parents:
diff changeset
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parents:
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
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parents:
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parents:
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parents:
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parents:
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
diff changeset
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parents:
diff changeset
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parents:
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parents:
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parents:
diff changeset
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parents:
diff changeset
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parents:
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parents:
diff changeset
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parents:
diff changeset
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parents:
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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diff changeset
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diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
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parents:
diff changeset
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parents:
diff changeset
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8541 //
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8542 HMMER2.0 [2.3.2]
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8543 NAME V-ATPase_G
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8544 ACC PF03179.7
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8546 LENG 105
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8547 ALPH Amino
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8548 RF no
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8549 CS no
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8550 MAP yes
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8553 NSEQ 34
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8554 DATE Tue Apr 22 17:22:48 2008
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8555 CKSUM 5949
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8563 HMM A C D E F G H I K L M N P Q R S T V W Y
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
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diff changeset
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parents:
diff changeset
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diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
diff changeset
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diff changeset
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parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
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diff changeset
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parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8880 - * * * * * * * -7771 0
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8881 //
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8882 HMMER2.0 [2.3.2]
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8883 NAME XhoI
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8884 ACC PF04555.5
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8885 DESC Restriction endonuclease XhoI
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8886 LENG 202
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8887 ALPH Amino
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8888 RF no
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8889 CS no
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8890 MAP yes
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8891 COM hmmbuild -f -F HMM_fs.ann SEED.ann
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8892 COM hmmcalibrate --seed 0 HMM_fs.ann
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8893 NSEQ 4
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8894 DATE Tue Apr 22 19:35:36 2008
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8895 CKSUM 1869
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8896 GA 25.0000 25.0000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8897 TC 48.0000 48.0000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8898 NC 16.4000 10.6000;
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
8902 EVD -9.990635 0.682481
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8903 HMM A C D E F G H I K L M N P Q R S T V W Y
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8904 m->m m->i m->d i->m i->i d->m d->d b->m m->e
94ab73e8a190 Uploaded
m-zytnicki
parents:
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8905 -263 * -2585
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m-zytnicki
parents:
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parents:
diff changeset
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parents:
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parents:
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parents:
diff changeset
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parents:
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parents:
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m-zytnicki
parents:
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
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parents:
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
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94ab73e8a190 Uploaded
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parents:
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
8941 - -16 -7446 -8488 -894 -1115 -701 -1378 -8914 -8611
94ab73e8a190 Uploaded
m-zytnicki
parents:
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parents:
diff changeset
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diff changeset
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parents:
diff changeset
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diff changeset
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parents:
diff changeset
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parents:
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m-zytnicki
parents:
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parents:
diff changeset
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parents:
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parents:
diff changeset
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parents:
diff changeset
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parents:
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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parents:
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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parents:
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parents:
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parents:
diff changeset
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parents:
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parents:
diff changeset
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parents:
diff changeset
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parents:
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parents:
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
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m-zytnicki
parents:
diff changeset
10336 - * * * * * * * * * * * * * * * * * * * *
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10337 - * * * * * * * -9470 0
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10338 //
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10339 HMMER2.0 [2.3.2]
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10340 NAME DUF1798
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10341 ACC PF08807.2
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10342 DESC Bacterial domain of unknown function (DUF1798)
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10343 LENG 114
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10344 ALPH Amino
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10345 RF no
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10346 CS no
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10347 MAP yes
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10348 COM hmmbuild -f -F HMM_fs.ann SEED.ann
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10349 COM hmmcalibrate --seed 0 HMM_fs.ann
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10350 NSEQ 15
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10351 DATE Wed Apr 23 02:14:02 2008
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10352 CKSUM 1086
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10353 GA 25.0000 25.0000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10354 TC 157.6000 157.6000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10355 NC 14.0000 13.2000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10357 NULT -4 -8455
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10359 EVD -9.714548 0.634826
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10360 HMM A C D E F G H I K L M N P Q R S T V W Y
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10361 m->m m->i m->d i->m i->i d->m d->d b->m m->e
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10362 -93 * -4000
94ab73e8a190 Uploaded
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diff changeset
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parents:
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
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parents:
diff changeset
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parents:
diff changeset
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parents:
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parents:
diff changeset
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parents:
diff changeset
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parents:
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parents:
diff changeset
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parents:
diff changeset
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
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parents:
diff changeset
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parents:
diff changeset
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
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parents:
diff changeset
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parents:
diff changeset
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parents:
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parents:
diff changeset
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parents:
diff changeset
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10703 - * * * * * * * * * * * * * * * * * * * *
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10704 - * * * * * * * -7913 0
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10705 //
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10706 HMMER2.0 [2.3.2]
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10707 NAME DUF881
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10708 ACC PF05949.4
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10709 DESC Bacterial protein of unknown function (DUF881)
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10710 LENG 237
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10711 ALPH Amino
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10712 RF no
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10713 CS no
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10714 MAP yes
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10715 COM hmmbuild -f -F HMM_fs.ann SEED.ann
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10716 COM hmmcalibrate --seed 0 HMM_fs.ann
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10717 NSEQ 86
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10718 DATE Tue Apr 22 20:40:31 2008
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10719 CKSUM 3639
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10720 GA 21.8000 21.8000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10721 TC 21.8000 23.4000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10724 NULT -4 -8455
94ab73e8a190 Uploaded
m-zytnicki
parents:
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parents:
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parents:
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m-zytnicki
parents:
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11441 //
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11442 HMMER2.0 [2.3.2]
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11443 NAME Jun
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11444 ACC PF03957.5
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11445 DESC Jun-like transcription factor
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11446 LENG 303
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11447 ALPH Amino
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11448 RF no
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11449 CS no
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11450 MAP yes
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11451 COM hmmbuild -f -F HMM_fs.ann SEED.ann
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11452 COM hmmcalibrate --seed 0 HMM_fs.ann
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11453 NSEQ 8
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11454 DATE Tue Apr 22 18:34:54 2008
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11455 CKSUM 5089
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11456 GA 17.1000 17.1000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11457 TC 19.5000 19.5000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11458 NC 14.6000 16.4000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11459 XT -8455 -4 -1000 -1000 -8455 -4 -8455 -4
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11460 NULT -4 -8455
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11461 NULE 595 -1558 85 338 -294 453 -1158 197 249 902 -1085 -142 -21 -313 45 531 201 384 -1998 -644
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11462 EVD -10.746502 0.736470
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11463 HMM A C D E F G H I K L M N P Q R S T V W Y
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11464 m->m m->i m->d i->m i->i d->m d->d b->m m->e
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11465 -222 * -2807
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11466 1 -3457 -3250 -4578 -4682 -2595 -3839 -3833 -2264 -4294 -1708 5248 -4331 -4225 -4184 -4072 -3938 -3655 -2653 -3435 -3236 1
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11467 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11468 - -13 -7716 -8758 -894 -1115 -701 -1378 -1222 -9238
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11469 2 -2158 -3524 -582 3298 -3978 -2358 -1318 -3723 1470 -3555 -2845 -1019 -2729 -948 -1034 -1923 -2126 -3313 -3559 -2987 2
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11470 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11471 - -13 -7716 -8758 -894 -1115 -701 -1378 -9461 -9236
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11472 3 -1080 -1949 -1247 -1026 -2936 -1903 -1292 -2625 -884 -2720 -1921 -1143 707 2400 -1202 -1136 2873 -2136 -2966 -2456 3
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11473 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11474 - -13 -7716 -8758 -894 -1115 -701 -1378 -9461 -9234
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11475 4 -1235 -1818 -3027 -3219 -3898 -2041 -3060 -3637 -3229 -3906 -3152 -2469 3734 -3029 -3204 -1471 1762 -2747 -4023 -3880 4
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11476 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11477 - -13 -7716 -8758 -894 -1115 -701 -1378 -9461 -9231
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11478 5 -2641 -2319 -4532 -4373 3950 -3950 -1907 -663 -4056 -856 -909 -3499 -3996 -3379 -3771 -3267 -2670 1382 -1223 -196 5
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11479 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11480 - -13 -7716 -8758 -894 -1115 -701 -1378 -9461 -9229
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11481 6 -2327 -2517 -3180 -3315 -151 -3049 -1364 -3049 -3228 -2780 -2544 -2650 -3500 -2840 -3154 1108 -2573 -2835 -842 4411 6
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11482 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11483 - -308 -7716 -2430 -894 -1115 -701 -1378 -9461 -9226
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11484 7 1376 -1517 -1341 -1250 -2737 1450 3962 -2552 -1350 -2716 -1915 -1216 -2162 -1248 -1665 -915 -1041 -1962 -2920 -2416 7
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11485 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11486 - -15 -7423 -8466 -894 -1115 -362 -2170 -9461 -9224
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11487 8 951 -3821 3190 1635 -4084 -2057 -1379 -3970 -1562 -3869 -3165 -667 -2567 -1039 -2369 -1730 -2099 -3453 -4069 -3102 8
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11488 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11489 - -13 -7716 -8758 -894 -1115 -701 -1378 -9461 -9222
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11490 9 951 -3826 3210 1589 -4089 -2058 -1383 -3976 -1568 -3876 -3172 -668 -2570 -1043 -2377 -1734 -2104 -3458 -4075 -3107 9
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11491 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11492 - -205 -7716 -2989 -894 -1115 -701 -1378 -9461 -9219
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11493 10 2190 -1311 -1672 -1280 -2302 -1618 -1333 -1900 -1204 -2157 -1373 1732 -2080 -1078 -1544 1023 -842 722 -2544 -2102 10
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11494 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11495 - -14 -7525 -8567 -894 -1115 -1280 -766 -9461 -9217
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11496 11 -2881 -2442 -4385 -4135 -68 -4154 -1716 -879 -3671 2825 -302 -3432 -3952 -3029 -3390 -3440 -2797 -1404 -1000 2237 11
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11497 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11498 - -14 -7525 -8567 -894 -1115 -430 -1957 -9461 -9214
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11499 12 1008 -1589 -2172 -2200 -3660 -1739 -2383 -3434 -2436 -3618 -2734 1056 -2436 -2174 -2668 3059 -1279 -2482 -3818 -3464 12
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11500 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11501 - -13 -7716 -8758 -894 -1115 -701 -1378 -9461 -9212
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11502 13 1709 -867 -2771 -2247 1339 1495 -1392 1366 -1965 -814 -204 -1883 -2410 -1682 -1950 -1335 -870 -264 -1467 -1086 13
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11503 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11504 - -583 -7716 -1618 -894 -1115 -701 -1378 -9461 -9209
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11505 14 1855 -804 -2020 -1629 -1335 -1543 -1257 -798 -1428 1516 -511 -1348 -1974 -1256 -1578 900 -615 -593 -1789 -1414 14
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11506 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11507 - -1083 -7151 -946 -894 -1115 -833 -1189 -9461 -9207
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11508 15 -2048 -1653 -3858 -3452 2913 -3572 -1527 129 -3122 2098 663 -2968 -3281 -2401 -2857 -2797 -1958 -402 -792 6 15
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11509 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11510 - -23 -6702 -7744 -894 -1115 -2292 -329 -9461 -9205
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11511 16 2800 -697 -1820 -1850 -2659 1384 -1771 -2320 -1918 -2622 -1804 -1240 -1656 -1661 -2019 -304 -477 -1503 -2868 -2607 16
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11512 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11513 - -23 -6702 -7744 -894 -1115 -1286 -762 -9461 -9202
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11514 17 754 -1540 -504 -140 -2263 540 -470 -1968 -129 -2029 -1171 -359 951 2652 -580 -467 -540 -1508 -2272 -1678 17
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11515 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11516 - -18 -7096 -8138 -894 -1115 -1959 -429 -9461 -9200
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11517 18 -671 -1922 -125 85 -2359 1310 2096 -2114 -84 -2132 -1281 1931 930 10 -577 -582 -676 -1690 -2341 -1676 18
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11518 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11519 - -18 -7096 -8138 -894 -1115 -1959 -429 -9461 -9197
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11520 19 2267 -2617 1577 1386 -2952 -1512 -634 -2729 -555 -2710 -1907 -165 -1894 -257 -1188 -916 -1132 -2279 -2927 -2135 19
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11521 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11522 - -18 -7096 -8138 -894 -1115 -1238 -795 -9461 -9195
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11523 20 1112 -1095 -2575 -2583 -3377 2261 -2401 -3140 -2601 -3368 -2463 -1767 -2084 -2284 -2664 2283 -878 -2097 -3576 -3346 20
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11524 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11525 - -16 -7303 -8345 -894 -1115 -846 -1172 -9461 -9192
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11526 21 -623 -1206 -2473 -2162 -2603 1462 -1953 -2197 -2022 -2504 -1720 -1699 -2201 -1821 -2209 2317 1018 1074 -2902 -2558 21
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11527 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11528 - -14 -7523 -8565 -894 -1115 -428 -1963 -9461 -9190
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11529 22 -806 -1433 -2720 -2541 -3238 2573 -2387 -2918 -2472 -3173 -2336 -1965 865 -2239 -2631 1766 -1176 438 -3483 -3171 22
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11530 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11531 - -141 -7716 -3533 -894 -1115 -701 -1378 -9461 -9187
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11532 23 364 -1415 -2823 -2419 1574 1011 -983 -1118 -2193 -1311 -763 -2022 -2788 -1852 -2210 -1754 -1415 -1017 -667 3614 23
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11533 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11534 - -1518 -7589 -635 -894 -1115 -1119 -890 -9461 -9185
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11535 24 2047 -315 -1008 -946 -1954 1750 -997 -1559 -1012 -1869 -1086 -599 -1200 -825 -1217 115 -27 -904 -2176 -1830 24
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11536 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11537 - -34 -6105 -7147 -894 -1115 -2581 -264 -9461 -9182
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11538 25 1776 -411 -880 -731 -1732 -661 -798 -1268 -710 -1586 -862 -523 2180 -595 -955 32 -69 -764 -1978 -1586 25
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11539 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11540 - -34 -6105 -7147 -894 -1115 -2581 -264 -9461 -9180
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11541 26 -98 -600 -1242 -1190 -1640 -914 -1112 -939 -1029 -1428 -940 -906 -1503 -1014 -1157 -332 3134 -627 -1961 -1609 26
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11542 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11543 - -34 -6105 -7147 -894 -1115 -2581 -264 -9461 -9177
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11544 27 286 -399 -713 -681 -2033 1715 -871 -1783 -835 -1993 -1175 -461 -1190 -656 -1097 2003 -48 -1059 -2215 -1807 27
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11545 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11546 - -34 -6105 -7147 -894 -1115 -1723 -520 -9461 -9175
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11547 28 1603 -635 -1562 -1618 -2573 2719 -1624 -2235 -1746 -2535 -1725 -1093 -1566 -1499 -1872 -228 -403 -1427 -2770 -2494 28
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11548 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11549 - -25 -6573 -7615 -894 -1115 -2371 -310 -9461 -9172
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11550 29 -313 -1290 -522 -44 -1944 -1231 -189 -1616 357 -1677 -854 -221 1143 199 1872 1201 -350 -1214 -1899 -1377 29
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11551 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11552 - -25 -6573 -7615 -894 -1115 -2371 -310 -9461 -9170
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11554 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11555 - -25 -6573 -7615 -894 -1115 -1742 -512 -9461 -9167
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11557 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11558 - -22 -6819 -7861 -894 -1115 -2210 -351 -9461 -9165
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11560 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11561 - -22 -6819 -7861 -894 -1115 -2210 -351 -9461 -9162
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11563 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11564 - -22 -6819 -7861 -894 -1115 -2210 -351 -9461 -9160
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11566 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11567 - -22 -6819 -7861 -894 -1115 -1204 -822 -9461 -9157
94ab73e8a190 Uploaded
m-zytnicki
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
diff changeset
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parents:
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parents:
diff changeset
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parents:
diff changeset
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
12374 - * * * * * * * -9461 0
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
12375 //
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
12376 HMMER2.0 [2.3.2]
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
12377 NAME Jun
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
12378 ACC PF03957.5
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
12379 DESC Jun-like transcription factor
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
12380 LENG 303
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
12381 ALPH Amino
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
12382 RF no
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
12383 CS no
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
12386 COM hmmcalibrate --seed 0 HMM_fs.ann
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
12387 NSEQ 8
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
12388 DATE Tue Apr 22 18:34:54 2008
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
12389 CKSUM 5089
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
12390 GA 17.1000 17.1000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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m-zytnicki
parents:
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94ab73e8a190 Uploaded
m-zytnicki
parents:
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94ab73e8a190 Uploaded
m-zytnicki
parents:
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94ab73e8a190 Uploaded
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parents:
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m-zytnicki
parents:
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m-zytnicki
parents:
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parents:
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m-zytnicki
parents:
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parents:
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m-zytnicki
parents:
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m-zytnicki
parents:
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parents:
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m-zytnicki
parents:
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m-zytnicki
parents:
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m-zytnicki
parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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m-zytnicki
parents:
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parents:
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parents:
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parents:
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parents:
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m-zytnicki
parents:
diff changeset
13696 - -11 -10266 -11308 -894 -1115 -407 -2024 -8128 -7248
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13697 122 -423 -3919 -1034 -636 -4237 626 -2086 -683 1300 343 93 342 -870 -179 2045 -302 -2391 -3539 1067 -3423 148
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13698 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13699 - -11 -10301 -11343 -894 -1115 -701 -1378 -8128 -7238
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13700 123 -2452 -3924 707 -144 -566 -3426 202 -983 1846 -1752 -3013 1398 -3519 -263 2099 -225 -770 -3546 -4107 -184 149
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13701 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13702 - -11 -10301 -11343 -894 -1115 -701 -1378 -8128 -7229
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13703 124 1417 -3923 -781 -687 -4243 -1535 -2085 -3993 -2 -3938 -3012 -402 -712 1236 -494 -862 -92 -671 4051 1429 150
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13704 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13705 S -11 -10301 -11343 -894 -1115 -701 -1378 -8128 -7219
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13706 125 -899 -2867 -3500 -287 648 -275 -2685 1340 799 718 -9 828 -3988 -283 171 -2915 -897 680 -3277 -79 151
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13707 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13708 T -11 -10301 -11343 -894 -1115 -701 -1378 -8128 -7209
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13709 126 818 -3924 -897 73 -4245 945 -2084 -994 1573 -1551 -3014 -401 -3519 507 1629 445 -2391 -3546 -4108 -661 152
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13710 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13711 T -12 -10302 -11344 -894 -1115 -701 -1378 -8128 -7201
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13712 127 -1056 -3916 -562 725 -4233 -1076 -2087 -756 -7 318 363 1365 -3521 969 583 199 -793 -3536 822 1925 153
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13713 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13714 T -12 -10301 -11343 -894 -1115 -701 -1378 -8128 -7190
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13715 128 508 -3888 837 -619 -737 -3436 -2096 180 103 -1056 -2982 317 -511 422 938 -219 907 662 -4082 -341 154
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13716 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13717 T -12 -10301 -11343 -894 -1115 -701 -1378 -8128 -7180
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13718 129 283 -3883 -674 -844 -665 1234 -2098 -878 1275 -1726 274 -459 191 -433 646 -966 -661 -1074 -4078 1782 155
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13719 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13720 T -12 -10301 -11343 -894 -1115 -701 -1378 -8128 -7170
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13721 130 1090 -3925 542 941 -330 211 296 -1428 1159 -3941 -3014 673 -3519 382 -500 204 -37 -3547 949 -3425 156
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13722 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13723 T -12 -10301 -11343 -894 -1115 -701 -1378 -8128 -7160
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13724 131 -368 -3806 -2365 -731 299 -142 -2124 -1149 1508 23 -2909 777 -994 628 663 -983 341 -193 -4021 1091 157
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13725 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13726 S -12 -10301 -11343 -894 -1115 -701 -1378 -8128 -7150
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13727 132 1108 -3915 1121 630 -4231 362 -2087 -146 1032 -859 -3005 641 486 -1629 -2176 -205 -584 -1083 -4101 -3421 158
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13728 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13729 G -12 -10301 -11344 -894 -1115 -701 -1378 -8128 -7140
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13730 133 -90 -3918 629 50 214 -183 543 1135 1194 -3933 862 367 -40 -1627 15 -995 214 -3539 -4103 605 159
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13731 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13732 G -12 -10302 -11344 -894 -1115 -701 -1378 -8128 -7129
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13733 134 -286 -3919 648 804 -545 -1118 -2086 -294 1181 -1694 -3009 800 -171 107 120 -320 -205 -1074 2351 350 160
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13734 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13735 G -12 -10302 -11344 -894 -1115 -701 -1378 -8128 -7119
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13736 135 259 -3915 199 890 -4231 -3428 311 216 450 313 -3005 1026 149 -75 514 -2335 -793 114 -4101 641 161
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13737 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13738 - -12 -10302 -11344 -894 -1115 -701 -1378 -8128 -7109
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13739 136 -1085 -2757 212 -1066 1195 -4010 375 1292 -3038 226 201 527 -4075 -341 623 -1026 -2580 -57 894 2221 162
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13740 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13741 H -12 -10302 -11344 -894 -1115 -701 -1378 -8128 -7098
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13742 137 -889 -3229 -2864 -686 1569 -3687 -2397 1087 -67 -722 -2387 1262 -844 599 -745 -77 -680 880 -3575 1451 163
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13743 - * * * * * * * * * * * * * * * * * * * *
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13744 H * * * * * * * -8128 0
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13745 //
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13746 HMMER2.0 [2.3.2]
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13747 NAME DUF2346
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13748 ACC PF09803.1
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13749 DESC Uncharacterized conserved protein (DUF2346)
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13750 LENG 85
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13751 ALPH Amino
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13752 RF no
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13753 CS no
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13754 MAP yes
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13755 COM hmmbuild -f -F HMM_fs.ann SEED.ann
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13756 COM hmmcalibrate --seed 0 HMM_fs.ann
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13757 NSEQ 4
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13758 DATE Wed Apr 23 11:37:31 2008
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13759 CKSUM 3285
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13760 GA 25.0000 25.0000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13761 TC 75.0000 75.0000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13762 NC 18.3000 18.3000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13763 XT -8455 -4 -1000 -1000 -8455 -4 -8455 -4
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13764 NULT -4 -8455
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13765 NULE 595 -1558 85 338 -294 453 -1158 197 249 902 -1085 -142 -21 -313 45 531 201 384 -1998 -644
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13766 EVD -9.353738 0.654674
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13767 HMM A C D E F G H I K L M N P Q R S T V W Y
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13768 m->m m->i m->d i->m i->i d->m d->d b->m m->e
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13769 -322 * -2322
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13770 1 -2406 -2296 -3638 -3594 -1525 -3105 -2824 -1047 -3121 -596 5043 -3293 -3425 -3046 -2996 -2911 -2552 -1398 -2513 -2207 1
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13771 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13772 - -24 -7117 -8159 -894 -1115 -701 -1378 -1322 -7392
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13773 2 -2594 -2690 -3304 -3623 -4328 3747 -3462 -4761 -3953 -4671 -4212 -3320 -3352 -3748 -3779 -2839 -2981 -4004 -3668 -4222 2
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13774 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13775 - -24 -7117 -8159 -894 -1115 -701 -1378 -7714 -7384
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13776 3 -509 -1122 -2185 -2309 -3189 3004 -2259 -2898 -2421 -3184 -2367 -1674 -2074 -2170 -2482 -734 1898 -2011 -3356 -3137 3
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13777 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13778 - -24 -7117 -8159 -894 -1115 -701 -1378 -7714 -7375
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13779 4 -4114 -3274 -4214 -4453 -1722 -3496 -2681 -4109 -4149 -3619 -3615 -4044 -3885 -4032 -3816 -4355 -4248 -4133 6191 -1329 4
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13780 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13781 - -24 -7117 -8159 -894 -1115 -701 -1378 -7714 -7366
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13782 5 799 -814 -1301 -734 -872 -1762 -550 -235 1486 -661 2104 -821 -1851 -420 -751 -774 -450 1283 -1272 -852 5
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13783 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13784 - -24 -7117 -8159 -894 -1115 -701 -1378 -7714 -7358
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13785 6 -2621 -2150 -4779 -4219 -461 -4494 -3220 96 -3870 2769 2743 -4144 -3872 -3010 -3534 -3778 -2499 -607 -2129 -2177 6
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13786 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13787 - -24 -7117 -8159 -894 -1115 -701 -1378 -7714 -7349
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13788 7 -2641 -3308 -896 3732 -3966 -2458 -2043 -4105 -2128 -4016 -3555 -1531 -2959 -1842 -2560 -2479 -2750 -3722 -3563 -3385 7
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13789 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13790 - -25 -7118 -8160 -894 -1115 -701 -1378 -7714 -7341
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13791 8 -1353 -1046 -3665 -3193 -1401 -3248 -2558 2516 -2958 -586 -336 -2889 -3238 -2741 -2967 -2445 1714 2060 -2409 -2013 8
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13792 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13793 - -25 -7117 -8159 -894 -1115 -701 -1378 -7714 -7331
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13794 9 1670 -1068 -2356 -2522 -3292 3016 -2397 -3020 -2673 -3306 -2459 -1734 -2052 -2340 -2677 -688 -888 -2041 -3464 -3286 9
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13795 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13796 - -25 -7117 -8159 -894 -1115 -701 -1378 -7714 -7322
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13797 10 -2094 -2785 -2682 -1412 -3620 -2623 -554 -2963 2657 -2626 -1956 -1316 -2575 -136 2950 -1975 -1788 -2730 -2468 -2362 10
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13798 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13799 - -25 -7117 -8159 -894 -1115 -701 -1378 -7714 -7313
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13800 11 -2181 -1846 -4016 -3616 2507 -3644 -1766 -192 -3261 453 4167 -3118 -3453 -2613 -3018 -2875 -2117 -683 -1079 -288 11
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13801 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13802 - -25 -7117 -8159 -894 -1115 -701 -1378 -7714 -7304
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13803 12 1903 -837 -1939 -1608 -1507 1291 -1314 -970 -1448 1218 -676 -1322 -1949 -1279 -1612 -710 -626 -724 -1938 -1564 12
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13804 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13805 - -25 -7117 -8159 -894 -1115 -701 -1378 -7714 -7295
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13806 13 -2608 -2141 -4766 -4204 -460 -4476 -3205 97 -3856 2695 3003 -4125 -3863 -3001 -3522 -3757 -2487 -604 -2124 -2169 13
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13807 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13808 - -25 -7117 -8159 -894 -1115 -701 -1378 -7714 -7285
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13809 14 -2505 -2094 -3669 -3495 642 -3542 -786 -1112 -3019 1517 -667 -2637 -3481 -2467 -2795 -2783 -2437 -1389 -126 3938 14
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13810 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13811 - -25 -7117 -8159 -894 -1115 -701 -1378 -7714 -7276
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13812 15 -1935 -1579 -4147 -3649 -752 -3770 -2800 2196 -3305 474 4085 -3414 -3529 -2828 -3155 -3003 -1884 302 -2168 -1994 15
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13813 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13814 - -25 -7117 -8160 -894 -1115 -701 -1378 -7714 -7267
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13815 16 1629 -934 -2493 -2453 -2801 -1255 -2155 -2210 -2315 -2678 -1928 -1654 -1972 -2085 -2350 -596 3203 -1547 -3107 -2843 16
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13816 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13817 - -25 -7117 -8160 -894 -1115 -701 -1378 -7714 -7257
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13818 17 -3342 -2776 -4026 -4232 4354 -3545 -1431 -2315 -4038 -1801 -1900 -3299 -3780 -3350 -3645 -3490 -3420 -2566 -739 349 17
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13819 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13820 - -25 -7118 -8160 -894 -1115 -701 -1378 -7714 -7248
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13821 18 -2931 -2878 -3420 -3706 -4181 -2925 -3468 -4621 -3859 -4490 -4165 -3491 4225 -3781 -3695 -3182 -3279 -4087 -3594 -4064 18
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13822 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13823 - -25 -7118 -8160 -894 -1115 -701 -1378 -7714 -7238
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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diff changeset
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parents:
diff changeset
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diff changeset
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diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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diff changeset
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parents:
diff changeset
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diff changeset
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parents:
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diff changeset
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parents:
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parents:
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diff changeset
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parents:
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diff changeset
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parents:
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diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
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parents:
diff changeset
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parents:
diff changeset
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parents:
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parents:
diff changeset
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parents:
diff changeset
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parents:
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parents:
diff changeset
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parents:
diff changeset
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diff changeset
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parents:
diff changeset
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14024 - * * * * * * * -7714 0
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14025 //
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14028 ACC PF01273.17
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14031 ALPH Amino
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14032 RF no
94ab73e8a190 Uploaded
m-zytnicki
parents:
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94ab73e8a190 Uploaded
m-zytnicki
parents:
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94ab73e8a190 Uploaded
m-zytnicki
parents:
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94ab73e8a190 Uploaded
m-zytnicki
parents:
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94ab73e8a190 Uploaded
m-zytnicki
parents:
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14038 DATE Wed Apr 23 15:04:47 2008
94ab73e8a190 Uploaded
m-zytnicki
parents:
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m-zytnicki
parents:
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94ab73e8a190 Uploaded
m-zytnicki
parents:
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94ab73e8a190 Uploaded
m-zytnicki
parents:
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parents:
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94ab73e8a190 Uploaded
m-zytnicki
parents:
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parents:
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m-zytnicki
parents:
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m-zytnicki
parents:
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14047 HMM A C D E F G H I K L M N P Q R S T V W Y
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
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diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
14669 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14670 T -9 -9974 -11017 -894 -1115 -701 -1378 -8751 -7714
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14673 T -9 -9974 -11017 -894 -1115 -701 -1378 -8751 -7707
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
14675 - * * * * * * * * * * * * * * * * * * * *
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14676 S * * * * * * * -8751 0
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14677 //
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14678 HMMER2.0 [2.3.2]
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14679 NAME DUF258
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14680 ACC PF03193.8
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14681 DESC Protein of unknown function, DUF258
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14682 LENG 305
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14683 ALPH Amino
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14684 RF no
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14685 CS yes
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14686 MAP yes
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14687 COM hmmbuild -f -F HMM_fs.ann SEED.ann
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14688 COM hmmcalibrate --seed 0 HMM_fs.ann
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14689 NSEQ 75
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14690 DATE Mon May 19 14:40:20 2008
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14691 CKSUM 4641
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14692 GA 40.0000 40.0000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14693 TC 41.2000 41.2000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14694 NC 39.3000 39.3000;
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m-zytnicki
parents:
diff changeset
14695 XT -8455 -4 -1000 -1000 -8455 -4 -8455 -4
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14696 NULT -4 -8455
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
14698 EVD -10.842202 0.641016
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14699 HMM A C D E F G H I K L M N P Q R S T V W Y
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14700 m->m m->i m->d i->m i->i d->m d->d b->m m->e
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14701 -25 * -5882
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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parents:
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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parents:
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14713 E -3 -11025 -12067 -894 -1115 -701 -1378 -9273 -9241
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m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14725 E -3 -11025 -12067 -894 -1115 -701 -1378 -9273 -9231
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14728 T -3 -11025 -12067 -894 -1115 -701 -1378 -9273 -9229
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
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parents:
diff changeset
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parents:
diff changeset
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parents:
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parents:
diff changeset
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parents:
diff changeset
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parents:
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parents:
diff changeset
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parents:
diff changeset
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parents:
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parents:
diff changeset
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parents:
diff changeset
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parents:
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parents:
diff changeset
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parents:
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parents:
diff changeset
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parents:
diff changeset
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m-zytnicki
parents:
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parents:
diff changeset
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parents:
diff changeset
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parents:
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parents:
diff changeset
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parents:
diff changeset
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parents:
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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parents:
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parents:
diff changeset
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parents:
diff changeset
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parents:
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15630 DATE Tue Apr 22 23:09:05 2008
94ab73e8a190 Uploaded
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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diff changeset
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15753 38 -5614 49 -8217 -7808 -4328 -8077 -7488 795 -7729 3070 -3066 -7766 -7459 -7007 -7554 -7480 -5556 424 -6187 -6199 42
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15754 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15755 - -34 -10841 -11883 -894 -1115 -701 -1378 -6386 -5493
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15756 39 -1736 -278 -29 -1406 -4697 -1179 -86 -4447 1567 1755 -535 -179 -3972 1441 -598 425 -754 -3998 -4560 -3878 43
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15757 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15758 - -2011 -10841 -457 -894 -1115 -701 -1378 -6386 -5460
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15759 40 -2585 -4156 -1058 2704 -4592 90 -2083 -4420 -2005 -4333 -3531 -1566 -3323 2718 -2631 902 -2622 -3906 -4506 -3679 44
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15760 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15761 - -39 -8869 -9911 -894 -1115 -21 -6099 -6386 -5427
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15762 41 -2997 -3872 -1022 -2606 840 -4086 1777 -3627 -564 784 -3017 34 -4172 -2432 -1204 -757 -1153 -3388 -4169 3768 45
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15763 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15764 - -36 -10843 -11885 -894 -1115 -701 -1378 -6386 -5393
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15765 42 -341 -4378 262 1282 240 -949 1559 -1581 981 -341 -3467 -837 -965 1289 1193 -188 -1310 -4000 -4561 -3878 46
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15766 - * * * * * * * * * * * * * * * * * * * *
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15767 - * * * * * * * -6386 0
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15768 //
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15769 HMMER2.0 [2.3.2]
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15770 NAME DUF1289
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15771 ACC PF06945.5
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15772 DESC Protein of unknown function (DUF1289)
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15773 LENG 56
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15774 ALPH Amino
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15775 RF no
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15776 CS no
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15777 MAP yes
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15778 COM hmmbuild -f -F HMM_fs.ann SEED.ann
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15779 COM hmmcalibrate --seed 0 HMM_fs.ann
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15780 NSEQ 27
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15781 DATE Thu Apr 24 21:10:17 2008
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15782 CKSUM 838
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15783 GA 25.0000 25.0000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15784 TC 25.1000 25.1000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15785 NC 23.5000 23.5000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15786 XT -8455 -4 -1000 -1000 -8455 -4 -8455 -4
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15787 NULT -4 -8455
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15788 NULE 595 -1558 85 338 -294 453 -1158 197 249 902 -1085 -142 -21 -313 45 531 201 384 -1998 -644
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15789 EVD -8.784554 0.652248
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15790 HMM A C D E F G H I K L M N P Q R S T V W Y
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15791 m->m m->i m->d i->m i->i d->m d->d b->m m->e
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15792 -67 * -4459
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15793 1 1056 -3317 529 1811 -3638 -2818 -1477 -3388 1147 -3333 -2406 -1454 380 243 1055 -1725 -111 -249 -3500 -2818 1
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15794 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15795 - -16 -9563 -10605 -894 -1115 -701 -1378 -1067 -6781
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15797 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15798 - -16 -9563 -10605 -894 -1115 -701 -1378 -6848 -6768
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
15800 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15801 - -16 -9563 -10605 -894 -1115 -701 -1378 -6848 -6755
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15803 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15804 - -16 -9563 -10605 -894 -1115 -701 -1378 -6848 -6741
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
15806 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15807 - -17 -9564 -10606 -894 -1115 -701 -1378 -6848 -6729
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15808 6 665 -3311 -1751 -1200 -3622 1652 1424 -3358 653 -151 -2408 16 -2954 -1061 683 1353 -1823 -2929 -3500 -2835 6
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15809 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15810 - -17 -9563 -10606 -894 -1115 -701 -1378 -6848 -6714
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15812 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15813 - -17 -9564 -10606 -894 -1115 -701 -1378 -6848 -6700
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15815 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15816 - -17 -9564 -10606 -894 -1115 -701 -1378 -6848 -6687
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15817 9 592 1977 -1725 -1175 -3571 -669 -1497 -3305 755 -3278 497 -1481 -2929 1621 1094 1581 559 -2882 -3468 -2801 9
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15818 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15819 - -17 -9564 -10606 -894 -1115 -701 -1378 -6848 -6672
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15820 10 -2076 -1903 -4416 -3780 272 -3625 -2496 833 -3377 1938 2225 -51 -3674 -3001 -3180 -301 994 526 -2362 -2020 10
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15821 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15822 - -17 -9564 -10606 -894 -1115 -701 -1378 -6848 -6658
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15824 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15825 - -17 -9564 -10606 -894 -1115 -701 -1378 -6848 -6644
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15826 12 909 -3219 1562 1547 841 474 -1506 -3219 -1104 -3217 244 -1495 -487 391 -1604 -601 -1791 -699 -3429 346 12
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15827 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15828 - -268 -9564 -2661 -894 -1115 -701 -1378 -6848 -6629
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15830 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15831 - -1176 -9315 -874 -894 -1115 -2408 -301 -6848 -6615
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15832 14 -1001 -2413 998 -282 -2737 -1933 1807 -2475 -232 -2444 -1540 -589 -2056 -191 843 1265 2081 -2046 -2630 -1960 14
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15833 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15834 - -23 -8162 -9204 -894 -1115 -57 -4679 -6848 -6601
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15835 15 -3152 -4822 2390 497 -5081 2557 -2589 -4904 458 -1046 -4000 -2103 -3876 -2201 -3152 -662 -3155 -4424 -4998 -4162 15
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15836 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15837 - -18 -9565 -10607 -894 -1115 -701 -1378 -6848 -6585
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15839 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15840 - -18 -9565 -10607 -894 -1115 -701 -1378 -6848 -6570
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15841 17 -6861 5871 -7218 -7599 -7570 -6083 -6809 -8514 -7728 -8020 -7889 -7357 -6576 -7579 -7167 -7256 -7178 -7987 -6446 -7556 17
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15842 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15843 - -18 -9565 -10607 -894 -1115 -701 -1378 -6848 -6555
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15844 18 -2043 -1962 -3878 -3272 1146 -3527 -2369 1296 837 773 1788 -946 -3583 72 525 -508 42 812 -2410 -2054 18
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15845 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15846 - -18 -9565 -10607 -894 -1115 -701 -1378 -6848 -6539
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
15848 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15849 - -19 -9566 -10608 -894 -1115 -701 -1378 -6848 -6525
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15851 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15852 - -19 -9565 -10608 -894 -1115 -701 -1378 -6848 -6508
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15854 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15855 - -19 -9566 -10608 -894 -1115 -701 -1378 -6848 -6492
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15857 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15858 - -19 -9566 -10608 -894 -1115 -701 -1378 -6848 -6476
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15860 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15861 - -19 -9566 -10608 -894 -1115 -701 -1378 -6848 -6459
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15862 24 21 -1937 -4147 -3523 -1894 -3582 920 659 286 1639 1075 -3135 -3634 -2838 1898 -2656 -2007 683 -2389 -2041 24
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15863 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15864 - -20 -9567 -10609 -894 -1115 -701 -1378 -6848 -6444
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15866 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15867 - -20 -9566 -10609 -894 -1115 -701 -1378 -6848 -6426
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15869 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15870 - -20 -9567 -10609 -894 -1115 -701 -1378 -6848 -6409
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15872 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15873 - -20 -9567 -10609 -894 -1115 -701 -1378 -6848 -6392
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15875 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15876 - -20 -9567 -10609 -894 -1115 -701 -1378 -6848 -6375
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
15881 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
15887 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15888 - -21 -9568 -10610 -894 -1115 -701 -1378 -6848 -6304
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
15890 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15891 - -21 -9568 -10610 -894 -1115 -701 -1378 -6848 -6285
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
15899 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15900 - -22 -9569 -10611 -894 -1115 -701 -1378 -6848 -6229
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
15902 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15903 - -22 -9569 -10611 -894 -1115 -701 -1378 -6848 -6209
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
15905 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15908 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15909 - -23 -9570 -10612 -894 -1115 -701 -1378 -6848 -6170
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15911 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15912 - -23 -9570 -10612 -894 -1115 -701 -1378 -6848 -6150
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
15914 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15915 - -24 -9571 -10613 -894 -1115 -701 -1378 -6848 -6130
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
15917 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15918 - -24 -9570 -10613 -894 -1115 -701 -1378 -6848 -6109
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
15920 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15921 - -24 -9571 -10613 -894 -1115 -701 -1378 -6848 -6087
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15923 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15924 - -25 -9572 -10614 -894 -1115 -701 -1378 -6848 -6067
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15926 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15927 - -25 -9571 -10614 -894 -1115 -701 -1378 -6848 -6044
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15929 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15930 - -25 -9572 -10614 -894 -1115 -701 -1378 -6848 -6022
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15932 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15933 - -26 -9573 -10615 -894 -1115 -701 -1378 -6848 -6001
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15935 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15936 - -26 -9572 -10615 -894 -1115 -701 -1378 -6848 -5977
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15938 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15939 - -26 -9573 -10615 -894 -1115 -701 -1378 -6848 -5954
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15941 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15942 - -27 -9574 -10616 -894 -1115 -701 -1378 -6848 -5932
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15944 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15945 - -27 -9574 -10616 -894 -1115 -701 -1378 -6848 -5907
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15947 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15948 - -28 -9575 -10617 -894 -1115 -701 -1378 -6848 -5884
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15950 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15951 - -28 -9574 -10617 -894 -1115 -701 -1378 -6848 -5858
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15953 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15954 - -28 -9575 -10617 -894 -1115 -701 -1378 -6848 -5833
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15956 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15957 - -29 -9576 -10618 -894 -1115 -701 -1378 -6848 -5808
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15958 56 328 -3313 -91 43 -80 -143 -1476 -3383 637 -1489 113 -33 1582 373 390 -66 903 -2934 823 -2815 56
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15959 - * * * * * * * * * * * * * * * * * * * *
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15960 - * * * * * * * -6848 0
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15961 //
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15962 HMMER2.0 [2.3.2]
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15963 NAME TRAP_alpha
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15964 ACC PF03896.8
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15965 DESC Translocon-associated protein (TRAP), alpha subunit
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15966 LENG 327
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15967 ALPH Amino
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15968 RF no
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15969 CS no
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15970 MAP yes
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15971 COM hmmbuild -f -F HMM_fs.ann SEED.ann
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15972 COM hmmcalibrate --seed 0 HMM_fs.ann
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15973 NSEQ 3
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15974 DATE Tue Apr 22 18:33:16 2008
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15975 CKSUM 6808
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15976 GA 25.0000 25.0000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15977 TC 35.3000 35.3000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15978 NC 19.0000 19.0000;
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15980 NULT -4 -8455
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15982 EVD -10.948719 0.710292
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15983 HMM A C D E F G H I K L M N P Q R S T V W Y
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15984 m->m m->i m->d i->m i->i d->m d->d b->m m->e
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15985 -415 * -2000
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15997 - -31 -6237 -7279 -894 -1115 -1292 -757 -9764 -9342
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
16000 - -31 -6237 -7279 -894 -1115 -425 -1969 -9764 -9340
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
16003 - -23 -6674 -7717 -894 -1115 -701 -1378 -9764 -9338
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
16005 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
16006 - -23 -6674 -7717 -894 -1115 -701 -1378 -9764 -9335
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
16967 //
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
16969 NAME DGOK
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
16973 ALPH Amino
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m-zytnicki
parents:
diff changeset
16974 RF no
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
16975 CS no
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
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m-zytnicki
parents:
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m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
16980 DATE Thu Apr 24 19:21:09 2008
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parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
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parents:
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parents:
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parents:
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parents:
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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17886 //
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parents:
diff changeset
17897 COM hmmcalibrate --seed 0 HMM_fs.ann
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
17898 NSEQ 156
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
17899 DATE Mon Jun 2 18:30:00 2008
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
17900 CKSUM 7481
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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parents:
diff changeset
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94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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m-zytnicki
parents:
diff changeset
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parents:
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parents:
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parents:
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diff changeset
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parents:
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m-zytnicki
parents:
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parents:
diff changeset
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parents:
diff changeset
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
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parents:
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parents:
diff changeset
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parents:
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parents:
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parents:
diff changeset
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94ab73e8a190 Uploaded
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
diff changeset
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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94ab73e8a190 Uploaded
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parents:
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parents:
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parents:
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parents:
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