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annotate commons/pyRepetUnit/hmmer/tests/datas/test_input_nt.fa @ 31:0ab839023fe4

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author m-zytnicki
date Tue, 30 Apr 2013 14:33:21 -0400
parents 94ab73e8a190
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18
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1 >blumeria_Grouper_28830_3
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2 TGTGGCTTCTAGTTGATCAGTTTATGATCACAATGATTTCACGTAGGTGTCTCGTGGCTC
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3 CGACTAATCAACAATATAATGCGAGTAGAGCTTGAGACTAATAAAACGTGAATTTNATTC
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4 TATAATACAGGATCGCCAACTTATTTAAATATTCCCCCGCACCACGTGAGCCAATCAACA
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5 GCGCACAATTTGCACGGTCGGGTTTCCATCAATTGGGATCCACAAACTATCCCCCTTCTC
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6 AAAACTAGCTGTCCACAGCTTATTTAAATTACAAGTTAATTAGAAATTTTATTATGGTAT
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7 CACTCAAACTAAATCCTTGCTGAATTTTTGAGTGTCTTTCTATCCTGCTCCAGCATACGG
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8 CGGCTACCATACCATAGACTACGAACTGGGTGTCCTTCACGTACATATGCCGGGAATAGG
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9 TTTGTGCCGTTGTACTTGTTGCCTAATTTGTATCCACCCGGTGATATTAAGGAGTAGGTA
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10 TTATTATTATGACAAGCTGCTACGGCCCATGGCCCGTCATAGTAGGGCTCCATCTTGTGT
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11 CTTCGCTGGCGTACTCGCAGTACCCAGTCTCCGGGGGCGTAAGTACGTATAAGTGCCTTT
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12 TCTTCCTGGAGGTAAGCCCGTATTTTATCCCTAGTTGCTTTCATACTACTAACGTAGGAG
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13 CGTGCTATTGGTGCGGGGTGTTTCCTTCCGAGTTCTTCGGCCCAGAGGCGCTCCTCTGAT
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14 TCTGTGGCTTCACGGGTATATACTGGATAAGAATTTTCCTCCTCCGGGGGCTGAGTGCCG
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15 AAGAGTAAGAAGTAAGGGCTATACCCGCTGGGTGAGACTCTTCGATTGAAATTCATTACC
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16 GCGAGTGAGAGAGCGCCAGCTAGTGTAATTTTAGGAGAATCCAGGAGAACTCTGACCAGT
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17 ATGGCTTTCAGAACGCCATTTGCCTGTTCGACTTTGCCATTTCCTCTTGGCCTAGCTGGT
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18 GTGGTATGGACAACCTGCAGTTGTTGGCTAGCTTGAAATCGTTGTGCTTCTATGCCTCCG
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19 AAGCAGCCAGCATTGTCACTGATAATCTGCTTTGGCTTTCCAAAGTTCTGGATAATATAC
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20 GTGAGCAGAGGCACAGTGTTAGCGAAGTCTGCATTGGGAACTAAGCGGGATTCCAGCCAG
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21 CCTGTTGCGTACTCAATTGCATTGAGCAAGACTTGGGGTCCTACTTGAGTATGATCTATA
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22 CCCCACCGTGTCAGAGGAGGTGCTGGTACTATAGGAGTTAAGCTTCCCAGTAACGGGTCT
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23 GGAGGTTTCATGAGCTGACAGGACTTGCATTTTCGGACAGCTTCGTGAGCCGCGAGGATC
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24 AGTTCGGGGTGCCAAAACCTACGCCCTAATTCCCGCATAGTATTGCCGATTGACGCATGG
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25 CCTTGGCCCTCATGAACATTTACGGCCGTCGATACTAGATCCTCATATTCCAAGATTTCT
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26 AGTAGGGTTGCGGCGCCAGATGGACCAGGTGCATCGCCTACTTGTTGCGACGGGTTCTTT
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27 TTGATGAGATGCAATTTGGAATTGTACATCGCAAAATTATCTCGGACCCAAGTGGCAGCT
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28 ATATTTAGGGGAAGTGCCTCTCCTAAGGTTAGAAATTCGGTGATGCACTGCAGGTCGATG
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29 CGGTTGAGTTCGTGTGGGTGCTTTATTTCCTCCATCTCAAGTTCTCTTTCTGCACCACTT
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30 TGGATTCTAGAGTTTTCGTTGTCGTCAGTAGCTACATTCCCTTCCCCTTCTTCCCTAGAG
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31 AGAAATAGAACATCACAGGGACGGGAGAGAAAATCAGCGAGAACATTTGCTTTTCCGCGA
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32 CGGTAGATAATCCTGATATTAAAATGCTCTATAGCATCTAAAAAACGGACCATTCTGACG
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33 GGCTGCTCGGCTTTGGTCTGAATAGTTCGTAGAGATTCATGGTCAGTTATCACCGTTACG
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34 TCGCCGCCTTCTACCCAGTGACGCCAATGTTGTAGTGACAGTAAAATCCCAAGTAATTCC
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35 CTCTCTTGTGCTGAATAACGCTGCTGGGTATCGTTTAGTTTTCTTGAGAAGTAAGCTATG
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36 GGATGCAGCACTGAACGATCGGAATTGTTGGAGCATCGCATGTACGGTTGGAGTATGACT
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37 GCACCCACGAACTTTTGGGAAGCGTCAGTTTCCAATATGACGGGAAGTCTCCAATCAAAT
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38 TTTTTTACAACTGGTGATGTTGTAAGCGCTAGTTTGATACTTTTCCATGATTGAATCGAT
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39 TGGTCCGTCAGAATGACAGGGCAATTTTTAGGTCCAGAGGATTGGTCCGTGAGTGGCCCT
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40 GCTAGTTGGGAGAAATTTTTAATGAGACAACGTAGGTAACCAGCTGCATTTACAAATCCT
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41 CTTATTTCCGAGGTAGTTGTTGGCATAGGCCTGTCTCTGATCGCTGAAACTTTTTCGGGG
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42 TCTGCTGCAATGCCATGTTTAGAAATATGGAAACCAAGGAAGATTCCCTCTGAAACAAAT
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43 AGCCTGCACTTTGAAGCATTGAGGAGGAGACCATAGGAAGCGAATCTAGAAAAAATAAGT
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44 ATCAACCGTGAGTGCAATTCTGCCATTGAGTCTGCCCAGACAGCTACATCGTCCAGGAGC
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45 CCTGCGACAAATGGACGGAATGGCTCTAGAACTTCTTCCATAAAACACTGGAAAGTAGCT
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46 GGTGCGTTGCATAGGCCGAAAGGCATAACTAGCCATTCATAGACACCGAAAGGAGTCACA
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47 AATGCTGTTTTCTCTGAAGAGTCTTTGTGCATACGTATCTGCCAAAATCCGTTTTCCAGG
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48 TCGAGGAATGCATAGAAGTTATGTCCTGCTGCGCGCTGAATTTCATCTTGAGCATTTGGT
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49 AGGGGATGGGCGTGTTTCTTCGTAATCTTGTTAAGCTCTCTATAGTCAACACAAATACGC
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50 CAAACGGTTTGGTTAGTCTGGGTTAGCGTCTTTTTTTGGTGTTAATAACAGAGGTGCAGC
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51 CCATGGTCCCTTACATTTGCGTATGAATTGAGCCGGTCATGTGTTGCACAAGAAAGTCCC
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52 CGGATGGCTTGTTGTTGCGCCGGGGCTATATCGCCTCGGAGGGGAGTTTTAAATTGGGTT
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53 GACAATTACCCCGTTTCTATGCGGGTGTTTCTGTCTTGGGAGAGTTTTATCCCATTTGGC
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54 GGGAGAGATTTATCGAAAAGTTGAAGGGGAATTTAACTTTGATATTGTAGGGAAAAACTG
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55 TAATGCGGAATGAAGGGTGGGCTGGGTGCCATTTGACCATTGGAATATTTGAAGTAGTGA
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56 AGACTTTTCGGTTTGGGAGAGTATTAATTATAGGATTAAGAATTGGTTGGTCAATTAAGT
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57 TGAGAAGTTGCAGTTTGCCATTTGATAAACATCGTAGCCCCAGTTCATGGAATAAAGTTT
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58 GTCCAAGTGTCACATCTGCTGGGAATGTGCCATCTGGGACAACTCCTAGAGACACTGTGA
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59 ATTCCTGAGTCCAGAATGATTCAAGGTGATTCGAGCAAAGAAACTGTGCAGTTAAAATTG
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60 CATCCTTAGAAATTGTTGGGCCAGGGCCACCAATGCCTGACATTTTAGAAATAATAGATG
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61 TATTATAAGAAGTCAAATATTTAGAGAAAGACTGTGAAACATAACATGCTGAAGAGCCGT
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62 AGTCAAAAAAAACTGAAAATTGGACATAGGGAAAATGAGTTATTCGTGCAAAAAACATTC
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63 TGTGTGGCTTGCCATATCCTTCCCGTAGAGGTTGTCCTTTTGGGGGTGGCTCAAATTTGC
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64 CCTTTCCTACGGCCACAAAGTAGGTATTCGGGCTGTCCTATTCATAAATTTCTTCATTTC
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65 GCATTCGATATAGAATGGCTTCAATTTCGTCATCGAGCTGCTCATCTTCTATTTGGCCTT
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66 CAGGGCTTATTTGCTCTTGATCCAAATCTTCTGGCTCAACAAGGAAAGTAGAAGTGACAG
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67 GCTTTGATGAACGATCGTGTGGTGTTACAGGTTTTACATATTTTTTATTTTTCATTGATT
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68 GGTAAGTTTTCCTGAATTTATCGCTGAAACGCGACGAGGTGTATTTAGCGTTTGGTGCAT
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69 ATTCCCTTTGTTCTTTTGATTCCACCGGCGCTGTTTTCATCAACCGGCAGTCTTTCGCCC
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70 AGTGGCCTGTCTTTCCGCAATTGAAGCATTCGTAACGCTTGTCGTGAATTGGGTATGATT
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71 TATCTGTTTCTGCAATGTCTTGTGACGCAAAGACGTCTTGCCCATACGACCTTGGATCAG
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72 CTATGGATGCGTCAAATGCTGGAAGCTTTTCGCCTTTTGACGCTGAGATCGGAATTGGTG
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73 CATTGGACTCGGAATGTTTGAATACATCATCCTCAAGTGTCCACCTTGTAATACCGCGTG
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74 TGACTTGAACCACTCGATCCGCAAGCTCCGCGCTGGTGAGTTTGGGGAGATTATTGGAAA
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75 TGATGGTCCAGGTACGTGGAAGTGAGAGTCGAATATGCTGCCTCAGTATATCTCTAGTCT
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76 GAGGCCCTACCATGACATCCGAAGGTAGGCTAAAGAAAGCTTTCCGGAGTCGTCGCGCAA
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77 ATTGTAATTGAGTCTCGTCGTTTCTTGCAGTTATTCGTGCAAATGTTGTCAAAGGCGACC
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78 CGAGTACATCATTGTCGAACAGTATTTTAAGGATACAGTCTACAGCTCCTGCCCAATCGA
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79 GGTGTTGACTGATGATTGTTCTTCGCGCCGAGATGAAATCTTCATCCATTTCCATTGCAA
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80 TTCTGATAGCCCAAGCAGAATATGGAAGCATATGTTGAATCATCAATGATTGCATGTGGT
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81 ATAATATATTCATTATGTTCTCATCAGCAAAGTGCAATTTCCATTGTGGTGGGAATACCG
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82 CGCGTGTTTTTCTATTTGCCTCTTTTAAAGGGCCGTGCGGATTTTCAGCTTCGGAACGCG
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83 AAAAGAAATCTGGGAAGTACCGCTTTATTTTTCGCTCTTGTTCAGTAACATTCAATGGTT
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84 CGTTAACTGACTGGCGGTATAAATTAATAGTCCCATCTTTGTTTTGCTCATCATTGCTTA
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85 GGTTGGGCGTTGTTTCATAGAATTGCGCCGAGGTAAAGGGTCTTTTCTTAGGCTGAAACA
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86 CGATTGGCCTGGTTGCGGGTCGCGAGGCGCTGCCTGCTGAAAAGTCAAATAGCTCCTCCC
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87 GGTATGGTTTTTTATTTTCAGATGGCCCTGCTTCCGAAAGTTGAAAGGGGACTGAATTTT
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88 TCGAAGAAGTTTTTGTTTCCACGTCTTCATTTCTACTTACTAGTTTGGAAATTAAGTCGT
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89 TCATTGCAGACATTTGTTTGACTAGAAGAGAAATTTGTGATTGGGTCTCTTCAAACCTTT
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90 GATCGATTCTCTTGGAGAGATCTTTTGTCACTGCCTTTGCAGCTTCATTAGCTTCGGAAA
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91 AATTTTCGTTGGCTTTGGTTTGCCCGGCAATGTGATCCTTCATCAAGCTTTCCAACTGAG
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92 CATTATTCAGGCCGACCATGATGATTGAATAGGTGGTGAAATGCGTAAAAAATTTGGAGA
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93 CGTCTTAAATTGGGATGACCTAGAATTGTGAGGTTCTCTCAACAAAAATATATAATTTTG
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94 TGGCTTCTAGTTGATCAGTTTATGATCACAATGATTTCACGTAGGTGTCTCGTGGCTCCG
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95 ACAAATCAACAATATAATGCGAGTAGAGCTTGAGACTAATAAAACGTGAATTTCATTCTA
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96 TAATACAGGACCGCCAACTTATTTAAATATTCCCCCGCACCACGTGAGCCAATCAACAGC
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97 ACACAATTTGCACGGTCGGGTTTCCATCAATTGGGATCCACA
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98 >blumeria_Grouper_14770_3
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99 GGTTAGACCGATACAGTAAGTCTCGTATGAAGTTGTGGAAGGAAGAATTGACTGGAAACA
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100 AGTGTATTGAGATGTATGGTTCTGAGTAAAACTGAGCTGATAAGAGTGAGATTGCGTGTG
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101 CGCATATCTTATCAACTGAGGTTTTTGACCAGTATTTATCAATCTCCATGGATCATAAGT
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102 TATGATCCCTGTAGATGTAAATCTATATACGTACAGATATATGAGCCAGAAATATAAAGC
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103 TAAATACATGTGTGTCGGTAATAGATCCGAGAAACCTTTAACCTGCATTTGATACATAAT
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104 CATCTGATGGAATGCTAGTGTGAAATAAATGCCAATGTACGTTAAACTTTCCGTGAGGAA
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105 TGTGCTGATGACAATGATATAGGAAGGTGAATTTGATAACCTAATTAGCCGGACTTACAA
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106 ATGAGTTATCCTTGGCATTCCAGGATATACAATATTTCAACACCCCTCCTCACTTTGCAT
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107 CGAGGATAGATACATAAGTGAAAAACTGTTAGTATATTTATTGTCATTTCTCATCTAATG
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108 CTGGTATGGTAGACACGCCAGTGGTTGTACTAGTACCAAAAACTGAAGTGCATAAATCGG
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109 TGTGCCTTGGTCTCGGTAAGCCTTTTGTACATATATCTGCGAGATTTTTAGCTGAAGGAA
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110 CATGTAATAGTGTAAGCGAGCCGTCTTCAATTCTTTCCCTTGTAAAATGATAAGCGATGT
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111 CGATATGTTTAGAAGCATCATTTAGTTTTGGATTGTGAGCAAGTTCAATGGCAGCCGTAT
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112 TGTCAGTCGAGATTGCTGCTGGGATGCTGTCTCCAAGGAATCGGTGAAGTCCGCGCAAAA
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113 TCCAGATATATTGTTTGGATGCGAGCGCTATTGCCATGTACTCAGCTTCGCAGGTTGAAT
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114 G
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115 >blumeria_Grouper_1717_12
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116 ATTTCCAGTATCTTGCCCTGAAGGGCCAGTAAGTCCTGATCGAATAGTTTTCGAAGTCTC
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117 TCGTCAGTGACTGGTTCCAACAGCTTGCAGAACCCAATGATGAAGCGCTCTGCTTGTGCG
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118 GAGCGCGTCTGGAATATCCTGCCCTGTTCGGCGAGGAATTTGGTCGCGACGATTTGAGGC
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119 GACGGAGTTTGTTGGTGCGGTGAGCTTCGATGACTCGCCTCGTAGATTGGCTCTACAAAT
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120 TGTTGTGTGGGTTGTTGTGATGGCGGTTGTGGCCCGTTAAGGACCATTTCGACGTCTTGA
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121 CGCGTCGAACATTGAGTTGGGAGGGGGGGCCAAGAGCCAGCCTCTGCGGAGGACTGGGGC
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122 GGCATGAGTGAGTGAGGTTTGTGGCAGTGTGAGATCGTAGATGGTATACGGCGCGCTTGA
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123 AGGG
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124