Mercurial > repos > yufei-luo > s_mart

annotate SMART/galaxy/removeExonLines.xml @ 9:1eb55963fe39

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Updated CompareOverlappingSmall*.py
author m-zytnicki
date Thu, 14 Mar 2013 05:23:05 -0400
parents 769e306b7933
children 94ab73e8a190
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
6
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
1 <tool id="removeExonLines" name="remove exon lines">
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
2 <description>Removes the lines containing Exon.</description>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
3 <command interpreter="sh"> ../Java/Python/removeExonLines.sh $inputFile > $outputFile </command>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
4 <inputs>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
5 <param name="inputFile" type="data" label="Input File" format="gff3"/>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
6 </inputs>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
7
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
8 <outputs>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
9 <data format="gff3" name="outputFile" label="[removeExonLine] Output File"/>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
10 </outputs>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
11
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
12 <help>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
13 command example: sh removeExonLines.sh input.gff3
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
14 </help>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
15 </tool>