annotate commons/core/sql/Job.py @ 32:3441fe98a2ba

Deleted selected files
author m-zytnicki
date Tue, 30 Apr 2013 14:34:10 -0400
parents 769e306b7933
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
6
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
1 # Copyright INRA (Institut National de la Recherche Agronomique)
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
2 # http://www.inra.fr
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
3 # http://urgi.versailles.inra.fr
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
4 #
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
5 # This software is governed by the CeCILL license under French law and
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
6 # abiding by the rules of distribution of free software. You can use,
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
7 # modify and/ or redistribute the software under the terms of the CeCILL
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
8 # license as circulated by CEA, CNRS and INRIA at the following URL
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
9 # "http://www.cecill.info".
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
10 #
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
11 # As a counterpart to the access to the source code and rights to copy,
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
12 # modify and redistribute granted by the license, users are provided only
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
13 # with a limited warranty and the software's author, the holder of the
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
14 # economic rights, and the successive licensors have only limited
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
15 # liability.
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
16 #
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
17 # In this respect, the user's attention is drawn to the risks associated
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
18 # with loading, using, modifying and/or developing or reproducing the
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
19 # software by the user in light of its specific status of free software,
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
20 # that may mean that it is complicated to manipulate, and that also
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
21 # therefore means that it is reserved for developers and experienced
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
22 # professionals having in-depth computer knowledge. Users are therefore
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
23 # encouraged to load and test the software's suitability as regards their
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
24 # requirements in conditions enabling the security of their systems and/or
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
25 # data to be ensured and, more generally, to use and operate it in the
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
26 # same conditions as regards security.
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
27 #
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
28 # The fact that you are presently reading this means that you have had
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
29 # knowledge of the CeCILL license and that you accept its terms.
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
30
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
31 ## Job informations to launch a command on a cluster.
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
32 #
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
33 class Job(object):
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
34
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
35 ## Constructor
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
36 #
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
37 # @param jobid the job identifier
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
38 # @param jobname the job name
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
39 # @param groupid the group identifier to record related job series
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
40 # @param queue queue name of the job manager
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
41 # @param command command launched
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
42 # @param node cluster node name where the execution takes place
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
43 # @param launcherFile file name launched as job
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
44 # @param lResources resources (memory, time...) but need to conform to SGE/Torque syntax !
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
45 #
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
46 def __init__(self, jobid=0, jobname="", groupid="", queue="", command="", launcherFile="",\
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
47 node="", lResources=["mem_free=1G"], parallelEnvironment="" ):
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
48 if str(jobid).isdigit():
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
49 self.jobid = int(jobid)
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
50 self.jobname = jobname
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
51 else:
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
52 self.jobname = jobid
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
53 self.jobid = 0
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
54 self.jobid = jobid
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
55 self.groupid = groupid
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
56 self.setQueue(queue)
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
57 self.command = command
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
58 self.launcher = launcherFile
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
59 self.node = node
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
60 self.lResources = lResources
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
61 self.parallelEnvironment = parallelEnvironment
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
62
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
63 def setQueue(self, queue):
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
64 self.queue = ""
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
65 if queue != "none":
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
66 self.queue = queue
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
67
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
68 def __eq__(self, o):
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
69 if self.jobid == o.jobid and self.jobname == o.jobname\
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
70 and self.groupid == o.groupid and self.queue == o.queue and self.command == o.command \
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
71 and self.launcher == o.launcher and self.node == o.node and self.lResources == o.lResources \
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
72 and self.parallelEnvironment == o.parallelEnvironment:
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
73 return True
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
74 return False