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annotate SMART/galaxy/getSequence.xml @ 15:440ceca58672

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author m-zytnicki
date Mon, 22 Apr 2013 11:08:07 -0400
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1 <tool id="getSequence" name="get sequence">
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2 <description>Get a single sequence in a FASTA file.</description>
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3 <command interpreter="python"> ../Java/Python/getSequence.py -i $inputFile
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4 -n $name
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5 -o $outputFile
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7 </command>
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8
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9
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10 <inputs>
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11 <param name="inputFile" type="data" label="Input fasta File" format="fasta"/>
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12 <param name="name" type="text" value="None" label="name of the sequence [compulsory option]"/>
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13 </inputs>
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14
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15 <outputs>
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16 <data format="fasta" name="outputFile" label="[getSequence] Output File"/>
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17 </outputs>
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18
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19 <help>
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20 </help>
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21 </tool>